OR10AA1P Olfactory Receptor
| Gene Symbol | OR10AA1P1 (View this gene in GeneCards) |
| Family | 10 |
| Subfamily | AA |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR1-24, HsOR1.4.19P, ORL3068 |
| External Ids | HGNC: 14989 GeneBank: AB065447, BK004531, NG_004278 ORDB: ORL3068 |
| Build #39 labels | OR10AA1P |
| Chromosomal location | 1:158,808,402-158,809,335 (-) |
| Cluster | 1@159a |
| Synteny | CLIC#4 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR10C1 | 47.28% | 294 |
| OR6N1 | 46.15% | 299 |
| OR6N2 | 42.72% | 309 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR10AA2 | 73% | 303 |
| Mouse | Or10aa1 | 84% | 303 |
| Rat | Or10aa1 | 83% | 303 |
| Cow | OR10AA1 | 82% | 303 |
| Cow | OR10AA1C | 80% | 303 |
| Orang | OR10AA1 | 93% | 299 |
| Horse | OR10AA1 | 82% | 303 |
| Chimp | OR6N1 | 46% | 305 |
Expression evidences
| Source | Accession |
|---|---|
| GNF Atlas2 | gnf1h10877_at |
Sequence information
| Nucleotide sequence |
ATGGATCACGTCAGTCATAACTGGACTCAGAGTTTTATCCTTGCTGGTTTCACCACCACT GGGACCCTACAACCTCTTGCCTTCTTGGGGACCCTATGCATCTATCTCCTCACACTTGCA GGGAACATTCTCATCATTGTCCTGGTACAGTTAGATTCTGGACTGTTCACGCCCATGTAC TTATTTATCAGTGTCCTCTCCTTTGTAGAGGTGTGGTATGTCAGCACCACAGTGCCCATG CTGCTGCACACCTTGCTCCAAGGGTGTTCACCCGTCTCATCAGCTGTATGCTTTATTCAG CTATGTCTTTCATTCCTTAGGGATGACTGAGTGCTACCTGCTGGGTGTCATGGCACTGGA TAGCTACCTTATCATCTGCCACCCACTCCACTACCACGCACTCATGAGCAGACAGGTACA GTTACGACTAGCTGGGGCCAGTTGGGTGGCTGGCTTCTCAGCTGCACTTGTGCCAGCCAC CCTCACTGCCACTCTGCCCTTCTGCTTGAAAGAGGTGGCCCATTACTTTTGTGACTTGGC ACCACTAATGCGGTTGGCATGTGTGGACACAAGCTGGCATGCTAGGGCCCATGGCACAGT GATTGGTGTGGCCACTGGTTGCAACTTTGTGCTCATTTTGGGACTCTATGGAGGTATCCT GAATGCTGTGCTGAAGCTACCCTCAGCTGCCAGTAGTGCCAAGGCCTTCTCTACCTGTTC CTCCCACGTAACTGTGGTGGCACTATTCTATGCTTCTGCCTTCACAGTATATGTGGGCTC ACCTGGGAGTCGACCTGAGAGCACAGACAAGCTTGTTGCCTTGGTTTATGCCCTTATTAC CCCTTTCCTCAATCCTATCATCTATAGCCTTCGCAACAAGGAGGTGAAGAAGGCTTTAAG GAGAGTCATGGCTGGGCGCGGTGGCTCACGCCTG |
| Conceptual translation |
MDHVSHNWTQSFILAGFTTTGTLQPLAFLGTLCIYLLTLAGNILIIVLVQLDSGLFTPMY LFISVLSFVEVWYVSTTVPMLLHTLLQGCSPVSSAVCFIQL\FHSLGMTECYLLGVMAL DSYLIICHPLHYHALMSRQVQLRLAGASWVAGFSAALVPATLTATLPFCLKEVAHYFCDL APLMRLACVDTSWHARAHGTVIGVATGCNFVLILGLYGGILNAVLKLPSAASSAKAFSTC SSHVTVVALFYASAFTVYVGSPGSRPESTDKLVALVYALITPFLNPIIYSLRNKEVKKAL RRVMAGRGGSRL Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 1 | 158,779,041 | 158,779,041 | SNP | A/G | rs16841119 (DbSNP) | |
| 1 | 158,778,853 | 158,778,853 | SNP | C/G | rs61746906 (DbSNP) | |
| 1 | 158,778,582 | 158,778,582 | SNP | C/T | rs6694926 (DbSNP) | |
| 1 | 158,778,206 | 158,778,206 | SNP | C/T | rs66499917 (DbSNP) | |
| 1 | 158,778,399 | 158,778,399 | SNP | G/A | rs61755195 (DbSNP) | |
| 1 | 158,778,764 | 158,778,764 | SNP | G/T | rs7550055 (DbSNP) | |
| 1 | 158,808,851 | 158,808,851 | SNP | T/G | 1000GP (CEU) | |
| 1 | 158,808,974 | 158,808,974 | SNP | T/G | 1000GP (CEU, CHBJPT) | |
| 1 | 100 | -100 | SNP | G/A | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.