OR10J2P Olfactory Receptor
| Gene Symbol | OR10J2P1 (View this gene in GeneCards) |
| Family | 10 |
| Subfamily | J |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | HsOR1.4.20P, ORL3069 |
| External Ids | HGNC: 14991 GeneBank: AB065446, NG_004364 ORDB: ORL3069 |
| Build #39 labels | OR10J2P |
| Chromosomal location | 1:159,279,044-159,280,001 (-) |
| Cluster | 1@159b |
| Synteny | CLIC#4 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR10J1 | 77.45% | 306 |
| OR10J8P | 77.12% | 306 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR10J2 | 80% | 309 |
| Mouse | Or10j2 | 85% | 308 |
| Rat | Or10j2 | 84% | 308 |
| Cow | OR10J2 | 85% | 306 |
| Orang | OR10J2 | 96% | 309 |
| Horse | OR10J2 | 88% | 309 |
| Chimp | OR10J8 | 78% | 306 |
Expression evidences
| Source | Accession |
|---|---|
| GNF Atlas2 | gnf1h10884_at |
Sequence information
| Nucleotide sequence |
TCTGTACTTTCAATCTGTTTATTTATCCAACGAAGAGAGAGAACCACACAGTGATAAGGG AGTTTGTTTTCCAGGGTTTCTCCAGCTTTCATGAACACAAGCTTACCCTCTTTGTGGTAT TTCTTACCTTGTGTCTTTTAACCCTGGCTGGCAATGTCATAATTGTGACAATTATCAGCA TTGATCGTCACCTTCACACCCCCATGTACTTCTTTGTTAGTATGCTTTCCACTTCAGAGA CTGTCTACACATTAGTCATTGTACCACGGATGCTCTCCAGTCTCTTAAGTCTAAGCCAAC CTATCTCTTTGGGTGGCTGTGCCACCCAGATGTTTTTTTTATTACCTTGGCCATCAACAA CTGCTTTCTGCTCACAGCAATGGGGTATGATCGCTATGTGGCCATCTGTAACCCTTTGAG GTACATGATCATCATGAACAAGAAAGTGTGTGTCCAGCTGGTATGTGGGTCCTGCAGTGT TGGGCTGCTTGTGGCCATAGTTCAGATTTCATCTGTGTTCAGGCTGCCTTTTTGTGATAA ACAGGTGGCCCATTATTTCTGTGATATCCACCCAGTTATGAAACTTTCCTGTGTTGATAC CACTCTACATGACCTAATTAATTTTGTTGTTAGTTCCCTGGTTATTGTGGTGCCGCTGGG TTTGGTCTTCATCTCCTACATCCTCATCATCTCTACCATCCTCAAGGTCACCTCTCCTGA GGGCCGGAAAAAGGCTTTTGCAACTTGTGCCTCCCACCTCACTGTGGTTATCATCCACTA TGGCTGTGCCTCCATTGCCTACCTCAAGCCCAAGTCAGAGAACACCAGGGATCAGGACCA GCTAATTTCAGTGACATACACCGTCTTTACTCCACTACTTAATCCTGTTGTGTACACTTT GAGGAACAAGGAGGTCAAGAATGCCCTTCACCGTGCTATTGGCAAAAAACCTTTTGCC |
| Conceptual translation |
SVLSIC/IYPTKRENHTVIREFVFQGFSSFHEHKLTLFVVFLTLCLLTLAGNVIIVTII SIDRHLHTPMYFFVSMLSTSETVYTLVIVPRMLSSLLSLSQPISLGGCATQM/FFITLA INNCFLLTAMGYDRYVAICNPLRYMIIMNKKVCVQLVCGSCSVGLLVAIVQISSVFRLPF CDKQVAHYFCDIHPVMKLSCVDTTLHDLINFVVSSLVIVVPLGLVFISYILIISTILKVT SPEGRKKAFATCASHLTVVIIHYGCASIAYLKPKSENTRDQDQLISVTYTVFTPLLNPVV YTLRNKEVKNALHRAIGKKPFA Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 1 | 159,249,453 | 159,249,452 | Ins(1) | -/A | rs67458903 (DbSNP) | |
| 1 | 159,249,460 | 159,249,459 | Ins(1) | -/A | rs57414108 (DbSNP) | |
| 1 | 159,249,138 | 159,249,138 | SNP | A/G | rs12087219 (DbSNP) | |
| 1 | 159,249,106 | 159,249,106 | SNP | A/T | rs12135501 (DbSNP) | |
| 1 | 159,249,187 | 159,249,187 | SNP | C/G | rs10489855 (DbSNP) | |
| 1 | 159,249,399 | 159,249,399 | SNP | C/G | rs10458629 (DbSNP) | |
| 1 | 159,249,058 | 159,249,058 | SNP | C/T | rs16841965 (DbSNP) | |
| 1 | 159,249,066 | 159,249,066 | SNP | C/T | rs16841967 (DbSNP) | |
| 1 | 159,248,859 | 159,248,859 | SNP | C/T | rs10489854 (DbSNP) | |
| 1 | 159,249,745 | 159,249,745 | SNP | G/T | rs11265164 (DbSNP) | |
| 1 | 159,249,743 | 159,249,743 | SNP | G/T | rs11265163 (DbSNP) | |
| 1 | 159,279,069 | 159,279,069 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 1 | 159,279,276 | 159,279,276 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 1 | 159,279,316 | 159,279,316 | SNP | T/A | 1000GP (CEU) | |
| 1 | 159,279,348 | 159,279,348 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 1 | 159,279,397 | 159,279,397 | SNP | G/C | 1000GP (CEU, CHBJPT) | |
| 1 | 159,279,953 | 159,279,953 | SNP | G/T | 1000GP (CEU, CHBJPT) | |
| 1 | 159,279,955 | 159,279,955 | SNP | G/T | 1000GP (CEU, CHBJPT) | |
| 1 | 159,279,268 | 159,279,268 | SNP | C/T | 1000GP (CHBJPT) | |
| 1 | 100 | -100 | SNP | C/T | 1000GP (YRI, YRI, YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 1 | 159,246,834 | 159,249,891 | CopyNumber | #28 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.