OR10J3 Olfactory Receptor
| Gene Symbol | OR10J31 (View this gene in GeneCards) |
| Family | 10 |
| Subfamily | J |
| Pseudogene | No |
| CORP pseudogene probability score | 0.2 (functional) |
| Aliases | OR1-25, HsOR1.4.21P |
| External Ids | HGNC: 14992 GeneBank: AB065445, AF399453, BK004532, NM_001004467 |
| Build #39 labels | OR10J3P |
| Chromosomal location | 1:159,313,673-159,314,659 (-) |
| Cluster | 1@159b |
| Synteny | CLIC#4 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR10J9P | 77.46% | 284 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR10J4 | 69% | 284 |
| Mouse | Or10j3 | 87% | 284 |
| Rat | Or10j3 | 87% | 284 |
| Cow | OR10J4 | 73% | 284 |
| Orang | OR10J9P | 79% | 280 |
| Horse | OR10J4 | 74% | 284 |
| Chimp | OR10J3P | 89% | 309 |
Expression evidences
| Source | Accession |
|---|---|
| mRNA | AB529279 |
| GNF Atlas2 | gnf1h10883_at |
Sequence information
| Nucleotide sequence |
ATGCCAAAGCTAAATTCCACTTTTGTGACTGAGTTCCTCTTTGAAGGTTTCTCCAGCTTC AGGCGGCAGCACAAACTTGTCTTCTTTGTTGTCTTCCTAACTTTGTACCTGCTGACTCTC TCTGGCAATGTGATTATCATGACCATTATTCGCCTGGACCATCATCTTCACACCCCCATG TACTTCTTCCTGTGCATGCTATCCATCTCTGAGACCTGCTACACTGTGGCCATCATTCCC CATATGCTTTCTGGTCTCTTGAATCCTCATCAGCCCATTGCCACCCAAAGCTGTGCCACT CAGCTCTTCTTCTATCTCACCTTTGGCATCAACAACTGCTTCCTGCTCACAGTCATGGGA TATGACCGCTATGTGGCCATCTGCAACCCCCTAAGGTATTCAGTCATCATGGGTAAGAGG GCCTGTATCCAACTGGCCTCTGGATCACTGGGGATTGGCCTTGGCATGGCCATTGTCCAA GTAACATCTGTGTTTGGCCTGCCATTCTGTGATGCCTTTGTCATCTCCCACTTCTTCTGT GATGTGAGACACCTGCTGAAGCTGGCCTGCACAGACACCACTGTCAATGAGATAATCAAC TTTGTTGTCAGCGTCTGTGTCCTTGTTCTACCTATGGGCCTGGTCTTTATCTCCTATGTC CTCATCATCTCCACCATTCTTAAGATTGCCTCAGCTGAAGGTCAGAAGAAGGCCTTTGCC ACCTGCGCCTCCCACCTCACAGTGGTCATCATCCACTATGGCTGTGCCTCCATCATCTAC CTGAAGCCTAAGTCCCAGAGTTCCCTGGGACAGGACAGACTCATCTCAGTGACCTACACT CATCACTCCCCTACTGAACCCTGTTGTGTACAGCCTGAAGAACAAGGAGGTCAAAGATGC TCTGCACAGAGCCGTGGGGCAAAAAACTCTGTCTCCTTAATGAAGAGAGGTTGTGAAGGC TTTTCCTTTGCGTTTATAAATATGTAC |
| Conceptual translation |
MPKLNSTFVTEFLFEGFSSFRRQHKLVFFVVFLTLYLLTLSGNVIIMTIIRLDHHLHTPM YFFLCMLSISETCYTVAIIPHMLSGLLNPHQPIATQSCATQLFFYLTFGINNCFLLTVMG YDRYVAICNPLRYSVIMGKRACIQLASGSLGIGLGMAIVQVTSVFGLPFCDAFVISHFFC DVRHLLKLACTDTTVNEIINFVVSVCVLVLPMGLVFISYVLIISTILKIASAEGQKKAFA TCASHLTVVIIHYGCASIIYLKPKSQSSLGQDRLISVTYTHHSPTEPCCVQPEEQGGQRC SAQSRGAKNSVSLMKRGCEGFSFAFINMY Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 1 | 100 | -100 | NS | C/T | G/R | 1000GP (YRI, YRI) |
| 1 | 159,283,494 | 159,283,494 | NS | C/T | G/E | rs58037016 (DbSNP) |
| 1 | 159,283,746 | 159,283,746 | NS | C/T | R/Q | rs11265165 (DbSNP) |
| 1 | 159,313,704 | 159,313,704 | NS | T/C | E/G | 1000GP (CEU, CHBJPT) |
| 1 | 159,313,956 | 159,313,956 | NS | T/C | Q/R | 1000GP (CEU, CHBJPT) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 1 | 159,281,463 | 159,284,549 | CopyNumber | #104 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
| E319G | G270R | Q235R | I222M | R183T | I175M | I69V | L52P | % Freq | CORP | |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | E | G | Q | I | R | I | I | L | 77.19 | 0.214 |
| 2 | G | G | R | I | R | I | I | L | 11.44 | 0.214 |
| 3 | E | G | R | I | R | I | I | L | 9.83 | 0.214 |
| 4 | E | R | Q | I | R | I | I | L | 0.38 | 0.214 |
| 5 | E | G | Q | I | R | I | V | L | 0.31 | 0.214 |
| 6 | G | G | Q | I | R | I | I | L | 0.23 | 0.214 |
| 7 | E | G | R | I | R | I | I | P | 0.15 | 0.214 |
| 8 | G | G | R | M | R | I | I | L | 0.15 | 0.214 |
| 9 | E | G | Q | I | R | M | I | L | 0.15 | 0.214 |
| 10 | E | G | Q | I | T | I | I | L | 0.08 | 0.214 |
| 11 | E | G | Q | I | R | I | I | P | 0.08 | 0.214 |
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR10J3.aApr07-unspliced | main_exon | 3UTR | chr1 | 159,313,670 | 159,313,673 | - |
| CDS | chr1 | 159,313,673 | 159,314,659 | - | ||
| OR10J3.bApr07 | exon_3UTR | chr1 | 159,312,919 | 159,313,514 | - | |
| main_exon | CDS_partial | chr1 | 159,314,562 | 159,314,659 | - | |
| 5UTR | chr1 | 159,314,659 | 159,314,684 | - | ||
| exon_5UTR | chr1 | 159,364,324 | 159,364,509 | - | ||
| exon_5UTR | chr1 | 159,468,842 | 159,469,084 | - | ||