OR10J4P Olfactory Receptor
| Gene Symbol | OR10J4P1 (View this gene in GeneCards) |
| Family | 10 |
| Subfamily | J |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | HsOR1.4.25P, ORL4120 |
| External Ids | HGNC: 15408 GeneBank: AF399454, AF546266-AF546279, NG_004367 ORDB: ORL4120 |
| Build #39 labels | OR10J4P |
| Chromosomal location | 1:159,432,204-159,433,135 (+) |
| Cluster | 1@159b |
| Synteny | CLIC#4 |
| Remarks | Segregating Pseudo Gene, a polymorphism of T->del at position 593 (rs11419544) |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR10J3 | 71.83% | 284 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR10J4 | 79% | 310 |
| Mouse | Or10j3 | 74% | 312 |
| Rat | Or10j3 | 74% | 312 |
| Cow | OR10J4 | 88% | 311 |
| Orang | OR10J3 | 74% | 310 |
| Horse | OR10J4 | 88% | 310 |
| Chimp | OR10J4 | 96% | 311 |
Sequence information
| Nucleotide sequence |
ATGCCAAGGCCCAATTTCATGGCTGTGACAGAGTTTACATTTGAGGGTTTCTCCATTTTT GAGTGGCATCACAGACTCATCCTCTTTGTGATCTTTTTGGTCTTGTACGTTTTGACCCTT GCCAGCAATGCTATCATCTTGATAGTTATCCGCCTTAACCATCAACTTCACACGCCCATG TATTTCTTCCTGAGTGTGCTGTCTATTTCTGAGACCTATTATACCGTGGCCATCAACCCC CAAATGCTGTCCGGTCTCCTCAGTCCTCAACAAACCATCTCCATCCCAGGCTGTGCCGCT CAGCTCTTTTTCTATCTCACTTTTGGTGTCAATAAATGCTTCCTGCTCACAGCCATGGGG TATGACCACTATGTGGCCATCTGCAACCCTCTACAGTATTCAGTCATCATGGGCAAAAAG GCTTGTATACAACTGGTCAGTGGATCCTGGAACATTGGCCTGAGCACAGCTATCATTCAG GTGTCTTCTGTATTCAGCCTTCCCTTCTGTGATGCTAATCTCATCTCCCACTTCTTTTGT GATATCCGGCCCATAATGAAGCTTGCCTGTGCAGACACTACTATCAAGGAGTTATTACTT TGCTCATCAGTCTCTGTGTCCTTGTTCTGCCCATGGTATTGATCTTCATCTCCTATGTCC TAATTGTCACCACCATCCTCAAGATTGCATCAGCTGAGGGCAGGAGAAAGGCCTTTGCTA CTTGTGCCTCACACCTCACAGTGGTCATTGTCCACTATGGCCGTACTTCTTTCATCTACC TAAAACCCAAATCCCAAAATTCCCTGCAGGACAGACTTATCTCTGTGACATACACTGTTA TTACTCCTCTGCTGAACCCTGTTGTATACAGCCTGAGGAACAAAGAGGTCAAGGATGCCT TGCTCAGAGCTTTGGGCAGAAAGCCTCTCTCT |
| Conceptual translation |
MPRPNFMAVTEFTFEGFSIFEWHHRLILFVIFLVLYVLTLASNAIILIVIRLNHQLHTPM YFFLSVLSISETYYTVAINPQMLSGLLSPQQTISIPGCAAQLFFYLTFGVNKCFLLTAMG YDHYVAICNPLQYSVIMGKKACIQLVSGSWNIGLSTAIIQVSSVFSLPFCDANLISHFFC DIRPIMKLACADTTIKE/ITLLISLCVLVLPMVLIFISYVLIVTTILKIASAEGRRKAF ATCASHLTVVIVHYGRTSFIYLKPKSQNSLQDRLISVTYTVITPLLNPVVYSLRNKEVKD ALLRALGRKPLS Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 1 | 159,402,585 | 159,402,584 | Ins(1) | -/T | rs11452668 (DbSNP) | |
| 1 | 159,402,588 | 159,402,587 | Ins(1) | -/T | rs34456671 (DbSNP) | |
| 1 | 159,402,586 | 159,402,585 | Ins(1) | -/T | rs67860211 (DbSNP) | |
| 1 | 159,402,587 | 159,402,586 | rescued_Del(-1) | -/T | rs11419544 (DbSNP) | |
| 1 | 159,402,695 | 159,402,695 | SNP | A/C | rs4491058 (DbSNP) | |
| 1 | 159,402,367 | 159,402,367 | SNP | A/T | rs61821481 (DbSNP) | |
| 1 | 159,402,290 | 159,402,290 | SNP | C/T | rs55893819 (DbSNP) | |
| 1 | 159,432,419 | 159,432,419 | SNP | C/T | 1000GP (CEU) | |
| 1 | 159,432,905 | 159,432,905 | SNP | A/C | 1000GP (CEU, CHBJPT) | |
| 1 | 159,432,605 | 159,432,605 | SNP | A/G | 1000GP (CHBJPT) | |
| 1 | 159,432,757 | 159,432,757 | SNP | T/C | 1000GP (CHBJPT) | |
| 1 | 100 | -100 | SNP | C/T | 1000GP (YRI, YRI) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.