OR10J5 Olfactory Receptor
| Gene Symbol | OR10J51 (View this gene in GeneCards) |
| Family | 10 |
| Subfamily | J |
| Pseudogene | No |
| CORP pseudogene probability score | |
| Aliases | OR1-28, HsOR1.4.27, ORL3018 |
| External Ids | HGNC: 14993 GeneBank: AB065443, AY284357-AY284388, BK004290, NM_001004469 ORDB: ORL3018 |
| Build #39 labels | OR10J5 |
| Chromosomal location | 1:159,535,081-159,536,007 (-) |
| Cluster | 1@159b |
| Synteny | CLIC#4 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR10J6P | 75.73% | 309 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR10J14 | 74% | 308 |
| Mouse | Or10j5 | 87% | 309 |
| Rat | Or10j5 | 87% | 309 |
| Cow | OR10J2 | 71% | 308 |
| Orang | OR10J6P | 74% | 304 |
| Horse | OR10J1 | 72% | 309 |
| Chimp | OR10J6P | 75% | 309 |
Expression evidences
| Source | Accession |
|---|---|
| mRNA | AB529280 |
Sequence information
| Nucleotide sequence |
ATGAAGAGAAAGAACTTCACAGAAGTGTCAGAATTCATTTTCTTGGGATTTTCTAGCTTT GGAAAGCATCAGATAACCCTCTTTGTGGTTTTCCTAACTGTCTACATTTTAACTCTGGTT GCTAACATCATCATTGTGACTATCATCTGCATTGACCATCATCTCCACACTCCCATGTAT TTCTTCCTAAGCATGCTGGCTAGTTCAGAGACGGTGTACACACTGGTCATTGTGCCACGA ATGCTTTTGAGCCTCATTTTTCATAACCAACCTATCTCCTTGGCAGGCTGTGCTACACAA ATGTTCTTTTTTGTTATCTTGGCCACTAATAATTGCTTCCTGCTTACTGCAATGGGGTAT GACCGCTATGTGGCCATCTGCAGACCCCTGAGATACACTGTCATCATGAGCAAGGGACTA TGTGCCCAGCTGGTGTGTGGGTCCTTTGGCATTGGTCTGACTATGGCAGTTCTCCATGTG ACAGCCATGTTCAATTTGCCGTTCTGTGGCACAGTGGTAGACCACTTCTTTTGTGACATT TACCCAGTCATGAAACTTTCTTGCATTGATACCACTATCAATGAGATAATAAATTATGGT GTAAGTTCATTTGTGATTTTTGTGCCCATAGGCCTGATATTTATCTCCTATGTCCTTGTC ATCTCTTCCATCCTTCAAATTGCCTCAGCTGAGGGCCGGAAGAAGACCTTTGCCACCTGT GTCTCCCACCTCACTGTGGTTATTGTCCACTGTGGCTGTGCCTCCATTGCCTACCTCAAG CCGAAGTCAGAAAGTTCAATAGAAAAAGACCTTGTTCTCTCAGTGACGTACACCATCATC ACTCCCTTGCTGAACCCTGTTGTTTACAGTCTGAGAAACAAGGAGGTAAAGGATGCCCTA TGCAGAGTTGTGGGCAGAAATATTTCT |
| Conceptual translation |
MKRKNFTEVSEFIFLGFSSFGKHQITLFVVFLTVYILTLVANIIIVTIICIDHHLHTPMY FFLSMLASSETVYTLVIVPRMLLSLIFHNQPISLAGCATQMFFFVILATNNCFLLTAMGY DRYVAICRPLRYTVIMSKGLCAQLVCGSFGIGLTMAVLHVTAMFNLPFCGTVVDHFFCDI YPVMKLSCIDTTINEIINYGVSSFVIFVPIGLIFISYVLVISSILQIASAEGRKKTFATC VSHLTVVIVHCGCASIAYLKPKSESSIEKDLVLSVTYTIITPLLNPVVYSLRNKEVKDAL CRVVGRNIS Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 1 | 159,505,101 | 159,505,101 | NS | A/G | W/R | rs35393723 (DbSNP) |
| 1 | 159,505,202 | 159,505,202 | NS | A/T | F/Y | rs56786307 (DbSNP) |
| 1 | 159,505,297 | 159,505,297 | SYN | C/T | P/P | rs4656837 (DbSNP) |
| 1 | 159,535,507 | 159,535,507 | SYN | C/T | P/P | 1000GP (CEU, CHBJPT) |
| 1 | 159,535,311 | 159,535,311 | NS | G/A | R/W | 1000GP (CEU) |
| 1 | 100 | -100 | NS | T/A | Y/F | 1000GP (YRI) |
| 1 | 100 | -100 | SYN | C/T | P/P | 1000GP (YRI) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
| R233W | Y199F | C188Y | I92V | F12L | % Freq | CORP | |
|---|---|---|---|---|---|---|---|
| 1 | R | Y | C | I | F | 88.17 | 0.288 |
| 2 | W | Y | C | I | F | 9.06 | 0.250 |
| 3 | R | F | C | I | F | 2.00 | 0.288 |
| 4 | R | Y | C | I | L | 0.46 | 0.288 |
| 5 | W | Y | C | V | F | 0.15 | 0.357 |
| 6 | W | Y | Y | I | F | 0.15 | 0.257 |
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR10J5.aApr07-unspliced | main_exon | 3UTR | chr1 | 159,535,078 | 159,535,081 | - |
| CDS | chr1 | 159,535,081 | 159,536,007 | - | ||