OR10V1 Olfactory Receptor
| Gene Symbol | OR10V11 (View this gene in GeneCards) |
| Family | 10 |
| Subfamily | V |
| Pseudogene | No |
| CORP pseudogene probability score | |
| Aliases | OR11-256, HsOR11.13.13, ORL3312 |
| External Ids | HGNC: 15136 GeneBank: AB065807, AF399593, BK004323, NM_001005324 ORDB: ORL3312 |
| Build #39 labels | OR10V1 |
| Chromosomal location | 11:59,712,919-59,713,845 (-) |
| Cluster | 11@59b |
| Synteny | CLIC#27 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR10Q1 | 55.78% | 303 |
| OR10Q2P | 55.63% | 302 |
| OR10V2P | 62.4% | 250 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR10V5 | 68% | 309 |
| Mouse | Or10v1 | 90% | 309 |
| Rat | Or10v1 | 88% | 309 |
| Cow | OR10Q1 | 57% | 304 |
| Orang | OR10Q1 | 57% | 306 |
| Horse | OR10V12 | 67% | 308 |
| Chimp | OR10Q1 | 57% | 306 |
Expression evidences
| Source | Accession |
|---|---|
| mRNA | AB529286 |
| GNF Atlas2 | gnf1h05541_at |
Sequence information
| Nucleotide sequence |
ATGGAAGGAATAAATAAAACTGCAAAGATGCAGTTTTTCTTTCGTCCATTCTCACCTGAC CCTGAGGTCCAGATGCTGATTTTTGTGGTCTTCCTGATGATGTATCTGACCAGCCTCGGT GGAAATGCTACAATTGCAGTCATTGTTCAGATCAATCATTCCCTCCACACCCCCATGTAC TTTTTCCTGGCTAATCTGGCAGTTCTAGAAATCTTCTATACATCTTCCATCACCCCATTG GCCTTGGCAAACCTCCTTTCAATGGGCAAAACTCCTGTTTCCATCACGGGATGTGGCACC CAGATGTTTTTCTTTGTCTTCTTGGGTGGGGCTGATTGTGTCCTGCTGGTAGTCATGGCT TATGACCAGTTTATAGCGATCTGTCACCCTCTGCGATACAGGCTCATCATGAGCTGGTCC TTGTGTGTGGAGCTGCTGGTAGGCTCCTTGGTGCTGGGGTTCCTGTTGTCACTGCCACTC ACCATTTTAATCTTCCATCTCCCATTCTGCCACAATGATGAGATCTACCACTTCTACTGT GACATGCCTGCAGTCATGCGCCTGGCTTGTGCAGACACACGCGTTCACAAGACTGCTCTG TATATCATCAGCTTCATCGTCCTTAGCATCCCCCTCTCATTGATCTCCATCTCCTATGTC TTCATCGTGGTAGCCATTTTACGGATCCGGTCAGCAGAAGGGCGCCAGCAAGCCTACTCT ACCTGCTCTTCTCACATCTTAGTGGTCCTCCTGCAGTATGGCTGCACCAGCTTTATATAC TTGTCCCCCAGTTCCAGCTACTCTCCTGAGATGGGCCGGGTGGTATCTGTGGCCTACACA TTTATCACTCCCATTTTAAACCCCTTGATCTATAGTTTGAGGAACAAGGAACTGAAAGAT GCCCTAAGGAAAGCATTGAGAAAATTC |
| Conceptual translation |
MEGINKTAKMQFFFRPFSPDPEVQMLIFVVFLMMYLTSLGGNATIAVIVQINHSLHTPMY FFLANLAVLEIFYTSSITPLALANLLSMGKTPVSITGCGTQMFFFVFLGGADCVLLVVMA YDQFIAICHPLRYRLIMSWSLCVELLVGSLVLGFLLSLPLTILIFHLPFCHNDEIYHFYC DMPAVMRLACADTRVHKTALYIISFIVLSIPLSLISISYVFIVVAILRIRSAEGRQQAYS TCSSHILVVLLQYGCTSFIYLSPSSSYSPEMGRVVSVAYTFITPILNPLIYSLRNKELKD ALRKALRKF Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 59,480,952 | 59,480,952 | nonsense SNP | A/G | */Q | rs499037 (DbSNP) |
| 11 | 59,480,969 | 59,480,969 | NS | A/G | V/A | rs472177 (DbSNP) |
| 11 | 59,481,311 | 59,481,311 | NS | C/T | G/E | rs12364373 (DbSNP) |
| 11 | 59,480,951 | 59,480,951 | NS | T/C | Q/R | rs499033 (DbSNP) |
| 11 | 59,481,016 | 59,481,016 | SYN | T/C | Q/Q | rs537595 (DbSNP) |
| 11 | 59,713,496 | 59,713,496 | NS | A/G | V/A | 1000GP (CEU, CHBJPT) |
| 11 | 59,713,646 | 59,713,646 | NS | G/T | A/E | 1000GP (CEU) |
| 11 | 59,713,543 | 59,713,543 | SYN | C/T | Q/Q | 1000GP (CEU, CHBJPT) |
| 11 | 59,713,478 | 59,713,478 | NS | T/C | Q/R | 1000GP (CEU, CHBJPT) |
| 11 | 59,713,464 | 59,713,464 | NS | A/T | C/S | 1000GP (CEU) |
| 11 | 59,713,287 | 59,713,287 | NS | G/A | R/C | 1000GP (CHBJPT) |
| 11 | 59,713,479 | 59,713,479 | nonsense SNP | G/A | Q/* | 1000GP (CHBJPT) |
| 11 | 100 | -100 | SYN | G/A | V/V | 1000GP (YRI, YRI) |
| 11 | 100 | -100 | NS | T/. | H/X | 1000GP (YRI, YRI, YRI, YRI) |
| 11 | 100 | -100 | nonsense SNP | G/A | Q/* | 1000GP (YRI) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
| H196R | R187C | Q123* | V117A | A67E | % Freq | CORP | |
|---|---|---|---|---|---|---|---|
| 1 | H | R | Q | V | A | 82.95 | 0.908 |
| 2 | H | R | Q | A | A | 7.53 | 0.908 |
| 3 | H | R | * | A | A | 5.53 | 1.200 |
| 4 | H | R | Q | A | E | 2.07 | 0.428 |
| 5 | H | C | Q | V | A | 0.77 | 0.908 |
| 6 | R | R | Q | A | A | 0.54 | 0.908 |
| 7 | H | R | Q | V | E | 0.46 | 0.428 |
| 8 | H | R | * | V | A | 0.15 | 1.200 |
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR10V1.aApr07-unspliced | main_exon | 3UTR | chr11 | 59,712,916 | 59,712,919 | - |
| CDS | chr11 | 59,712,919 | 59,713,845 | - | ||