OR13C3 Olfactory Receptor
| Gene Symbol | OR13C31 (View this gene in GeneCards) |
| Family | 13 |
| Subfamily | C |
| Pseudogene | No |
| CORP pseudogene probability score | 0.31 (functional) |
| Aliases | OR9-8, HsOR9.4.3, ORL3222 |
| External Ids | HGNC: 14704 GeneBank: AB065713, BK004410, NM_001001961 ORDB: ORL3222 |
| Build #39 labels | OR13C3 |
| Chromosomal location | 9:104,535,773-104,536,723 (-) |
| Cluster | 9@107 |
| Synteny | CLIC#19 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR13C4 | 83.91% | 317 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR13C4 | 87% | 316 |
| Mouse | Or13c3 | 86% | 314 |
| Rat | Or13c3b | 85% | 316 |
| Rat | Or13c3 | 85% | 316 |
| Rat | Or13c3c | 85% | 316 |
| Rat | Or13c3g | 84% | 316 |
| Cow | OR13C4 | 85% | 317 |
| Orang | OR13C3P | 93% | 317 |
| Horse | OR13C4 | 87% | 317 |
| Chimp | OR13C4P | 84% | 317 |
Expression evidences
| Source | Accession |
|---|---|
| mRNA | AB529293 |
| GNF Atlas2 | gnf1h02221_at |
Sequence information
| Nucleotide sequence |
ATGGGTGAGATTAACCAGACACTTGTGTCAGAATTTCTTCTTCTGGGTCTTTCTGGATAC CCAAAGATTGAGATTGTTTACTTTGCTCTCATTCTAGTTATGTACCTAGTGATTCTAATT GGCAATGGTGTTCTAATCATAGCCAGCATCTTTGATTCTCATTTTCACACACCAATGTAC TTCTTCCTGGGCAACCTCTCTTTCCTGGATATCTGCTATACATCCTCCTCTGTTCCCTCA ACATTGGTGAGCTTAATCTCAAAGAAAAGAAACATTTCCTTCTCTGGATGTGCAGTGCAG ATGTTCTTTGGGTTTGCAATGGGGTCAACAGAATGTCTGCTTCTTGGCATGATGGCATTT GATCGTTATGTGGCCATCTGCAACCCACTGAGATACCCCATCATCCTGAGCAAGGTGGCG TATGTATTGATGGCTTCTGTGTCCTGGCTGTCCGGTGGAATAAATTCAGCTGTGCAAACA TTACTTGCCATGAGACTGCCTTTCTGTGGGAATAATATTATCAATCATTTCGCATGTGAA ATATTAGCTGTCCTCAAGCTGGCCTGTGCTGATATATCCCTCAATATTATCACCATGGTG ATATCAAATATGGCCTTCCTGGTTCTTCCACTGATGGTCATTTTTTTCTCCTATATGTTC ATCCTCTACACCATCTTGCAAATGAATTCAGCCACAGGAAGACGCAAGGCATTTTCCACG TGCTCAGCTCACCTGACTGTGGTGATCATATTTTACGGTACCATCTTCTTTATGTATGCG AAACCGAAGTCTCAAGACCTGATTGGGGAAGAAAAATTGCAAGCATTAGACAAGCTCATT TCTCTGTTTTATGGGGTAGTGACACCCATGCTGAATCCTATACTCTATAGCTTGAGAAAT AAGGATGTAAAAGCTGCTGTAAAATATTTGCTGAACAAAAAACCAATTCAC |
| Conceptual translation |
MGEINQTLVSEFLLLGLSGYPKIEIVYFALILVMYLVILIGNGVLIIASIFDSHFHTPMY FFLGNLSFLDICYTSSSVPSTLVSLISKKRNISFSGCAVQMFFGFAMGSTECLLLGMMAF DRYVAICNPLRYPIILSKVAYVLMASVSWLSGGINSAVQTLLAMRLPFCGNNIINHFACE ILAVLKLACADISLNIITMVISNMAFLVLPLMVIFFSYMFILYTILQMNSATGRRKAFST CSAHLTVVIIFYGTIFFMYAKPKSQDLIGEEKLQALDKLISLFYGVVTPMLNPILYSLRN KDVKAAVKYLLNKKPIH Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 9 | 107,299,001 | 107,299,001 | NS | A/C | C/G | rs41304943 (DbSNP) |
| 9 | 107,298,827 | 107,298,827 | NS | G/A | H/Y | rs61742435 (DbSNP) |
| 9 | 107,298,217 | 107,298,217 | NS | G/T | T/K | rs10512330 (DbSNP) |
| 9 | 107,298,285 | 107,298,285 | SYN | C/T | T/T | rs41312212 (DbSNP) |
| 9 | 107,298,444 | 107,298,444 | SYN | C/T | L/L | rs41305445 (DbSNP) |
| 9 | 107,298,957 | 107,298,957 | SYN | G/A | G/G | rs61738863 (DbSNP) |
| 9 | 104,536,720 | 104,536,720 | NS | C/A | G/C | 1000GP (CEU, CHBJPT) |
| 9 | 104,536,163 | 104,536,163 | SYN | C/T | L/L | 1000GP (CEU, CHBJPT) |
| 9 | 104,536,004 | 104,536,004 | SYN | C/T | T/T | 1000GP (CEU, CHBJPT) |
| 9 | 104,536,255 | 104,536,255 | NS | C/T | A/T | 1000GP (CHBJPT) |
| 9 | 100 | -100 | SYN | T/C | V/V | 1000GP (YRI, YRI, YRI, YRI) |
| 9 | 100 | -100 | NS | T/G | K/T | 1000GP (YRI, YRI, YRI, YRI) |
| 9 | 100 | -100 | nonsense SNP | A/C | L/* | 1000GP (YRI) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
| K293T | M258T | M229V | L191* | A187T | Y90H | E41* | G32C | % Freq | CORP | |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | K | M | M | L | A | Y | E | G | 87.79 | 0.959 |
| 2 | K | M | M | L | A | Y | E | C | 9.98 | 0.959 |
| 3 | T | M | M | L | A | H | E | G | 0.69 | 0.959 |
| 4 | K | M | V | L | A | Y | E | G | 0.61 | 0.959 |
| 5 | K | T | M | L | A | Y | E | G | 0.54 | 0.959 |
| 6 | K | M | M | L | T | Y | E | G | 0.23 | 0.959 |
| 7 | K | M | M | * | A | Y | E | G | 0.08 | 1.200 |
| 8 | K | M | M | L | A | Y | * | C | 0.08 | 1.200 |
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR13C3.aApr07-unspliced | main_exon | 3UTR | chr9 | 104,535,770 | 104,535,773 | - |
| CDS | chr9 | 104,535,773 | 104,536,723 | - | ||
| 5UTR | chr9 | 104,536,723 | 104,536,813 | - | ||