Search Olfactory receptors

(e.g. OR1G1, AF087928, Segregating Pseudo)

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OR13D1 Olfactory Receptor

Gene Symbol OR13D11 (View this gene in GeneCards)
Family 13
Subfamily D
Pseudogene No
CORP pseudogene probability score 0.16 (functional)
Aliases OR9-15, HsOR9.4.11, ORL3242
External Ids HGNC: 14695   GeneBank: AB065671, BK004251, NM_001004484   ORDB: ORL3242   
Build #39 labels OR13D1
Chromosomal location 9:104,694,518-104,695,459 (+)
Cluster 9@107
Synteny CLIC#19
Remarks

Most Similar ORs in Humans (Paralogs)

Symbol Percent Length
OR13D3P 86.31% 314

Most Similar ORs in other species (Orthologs)

Specie Symbol Percent Length
Dog OR13D3 88% 314
Dog OR13D1B 88% 313
Mouse Or13d1 86% 314
Rat Or13d1 85% 310
Cow OR13D1P 84% 311
Orang OR13D1P 94% 316
Horse OR13D34P 75% 316
Chimp OR13D3P 85% 314

Expression evidences

Source Accession
mRNA AB587601
GNF Atlas2 gnf1h02218_at

Sequence information

Nucleotide sequence ATGGAGACAAGAAATTACTCTGCCATGACTGAATTCTTTCTGGTGGGGCTTTCCCAATAT
CCAGAGCTCCAGCTTTTTCTGTTCCTGCTCTGCCTCATCATGTACATGATAATCCTCCTG
GGAAATAGCCTCCTCATTATCATCACCATCTTGGATTCTCGCCTCCATACTCCCATGTAT
TTCTTTCTTGGAAACCTCTCATTCTTGGACATCTGTTACACATCCTCATCCATTCCTCCA
ATGCTTATTATATTTATGTCTGAGAGAAAATCCATCTCCTTCATTGGCTGTGCTCTGCAG
ATGGTTGTGTCCCTTGGCTTGGGCTCCACTGAGTGTGTCCTCCTGGCTGTGATGGCCTAT
GACCACTATGTGGCCATCTGCAACCCACTGAGGTACTCCATCATCATGAACGGAGTGCTG
TATGTGCAAATGGCTGCATGGTCCTGGATCATAGGCTGTCTGACCTCCCTATTGCAAACA
GTTCTGACAATGATGTTGCCTTTCTGTGGGAATAATGTCATTGATCATATTACCTGTGAA
ATTTTGGCCCTTCTAAAACTTGTTTGTTCAGATATCACCATCAATGTGCTTATCATGACA
GTGACAAATATTGTTTCACTGGTGATTCTTCTACTGTTAATTTTCATCTCCTATGTGTTT
ATTCTCTCTTCCATCCTGAGAATTAATTGTGCTGAGGGAAGAAAGAAAGCCTTCTCTACC
TGTTCAGCGCACTCGATTGTGGTCATCTTATTCTACGGTTCAGCCCTTTTTATGTACATG
AAACCCAAGTCAAAGAACACTAATACATCTGATGAGATTATTGGGCTGTCTTATGGAGTG
GTAAGCCCAATGTTAAATCCCATCATCTATAGCCTCAGGAATAAAGAGGTCAAAGAGGCT
GTAAAGAAAGTCCTGAGCAGACATCTGCATTTATTGAAAATG
Conceptual translation METRNYSAMTEFFLVGLSQYPELQLFLFLLCLIMYMIILLGNSLLIIITILDSRLHTPMY
FFLGNLSFLDICYTSSSIPPMLIIFMSERKSISFIGCALQMVVSLGLGSTECVLLAVMAY
DHYVAICNPLRYSIIMNGVLYVQMAAWSWIIGCLTSLLQTVLTMMLPFCGNNVIDHITCE
ILALLKLVCSDITINVLIMTVTNIVSLVILLLLIFISYVFILSSILRINCAEGRKKAFST
CSAHSIVVILFYGSALFMYMKPKSKNTNTSDEIIGLSYGVVSPMLNPIIYSLRNKEVKEA
VKKVLSRHLHLLKM

Protein domains and features

Variations - SNPs

Chr Start End Type Variation AA Change SNP IDs
9 107,457,275 107,457,275 NS A/C Q/H rs10820709 (DbSNP)
9 107,457,039 107,457,039 NS A/G M/V rs56241491 (DbSNP)
9 107,456,841 107,456,841 NS A/G M/V rs73663505 (DbSNP)
9 107,457,376 107,457,376 NS C/T T/I rs61735916 (DbSNP)
9 107,456,928 107,456,928 NS C/T L/F rs56017313 (DbSNP)
9 107,457,532 107,457,532 NS C/T S/L rs10761073 (DbSNP)
9 107,457,686 107,457,686 NS G/T E/D rs61733820 (DbSNP)
9 107,457,725 107,457,725 SYN A/G L/L rs12338899 (DbSNP)
9 107,456,933 107,456,933 SYN C/T L/L rs12347076 (DbSNP)
9 107,457,332 107,457,332 SYN C/T T/T rs61742675 (DbSNP)
9 104,694,994 104,694,994 NS A/C Q/H 1000GP (CEU, CHBJPT)
9 104,694,652 104,694,652 SYN C/T L/L 1000GP (CEU, CHBJPT)
9 104,695,444 104,695,444 SYN G/A L/L 1000GP (CEU, CHBJPT)
9 104,695,251 104,695,251 NS C/T S/L 1000GP (CEU, CHBJPT)
9 104,695,051 104,695,051 SYN C/T T/T 1000GP (CHBJPT)
9 100 -100 SYN C/T L/L 1000GP (YRI, YRI, YRI)
9 100 -100 NS A/C Q/H 1000GP (YRI, YRI, YRI, YRI)

Haplotypes

Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.

I127M T142A G170R Q191H T225I S277L E328D % Freq CORP
1 I T G H T L E 44.47 0.799
2 I T G Q T L E 26.88 0.799
3 I T G Q T S E 25.88 0.799
4 I T R H T L E 0.84 0.799
5 I T G H T L D 0.61 0.799
6 I T G Q I S E 0.61 0.542
7 I A G Q T S E 0.23 0.799
8 I T G H T S E 0.23 0.799
9 M T G Q T L E 0.23 0.799

AceView Gene Models

The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.

Accession Type Chr Start End Strand
OR13D1.aApr07-unspliced main_exon 5UTR chr9 104,694,422 104,694,518 +
CDS chr9 104,694,518 104,695,459 +
3UTR chr9 104,695,459 104,695,462 +