OR13D1 Olfactory Receptor
| Gene Symbol | OR13D11 (View this gene in GeneCards) |
| Family | 13 |
| Subfamily | D |
| Pseudogene | No |
| CORP pseudogene probability score | 0.16 (functional) |
| Aliases | OR9-15, HsOR9.4.11, ORL3242 |
| External Ids | HGNC: 14695 GeneBank: AB065671, BK004251, NM_001004484 ORDB: ORL3242 |
| Build #39 labels | OR13D1 |
| Chromosomal location | 9:104,694,518-104,695,459 (+) |
| Cluster | 9@107 |
| Synteny | CLIC#19 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR13D3P | 86.31% | 314 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR13D3 | 88% | 314 |
| Dog | OR13D1B | 88% | 313 |
| Mouse | Or13d1 | 86% | 314 |
| Rat | Or13d1 | 85% | 310 |
| Cow | OR13D1P | 84% | 311 |
| Orang | OR13D1P | 94% | 316 |
| Horse | OR13D34P | 75% | 316 |
| Chimp | OR13D3P | 85% | 314 |
Expression evidences
| Source | Accession |
|---|---|
| mRNA | AB587601 |
| GNF Atlas2 | gnf1h02218_at |
Sequence information
| Nucleotide sequence |
ATGGAGACAAGAAATTACTCTGCCATGACTGAATTCTTTCTGGTGGGGCTTTCCCAATAT CCAGAGCTCCAGCTTTTTCTGTTCCTGCTCTGCCTCATCATGTACATGATAATCCTCCTG GGAAATAGCCTCCTCATTATCATCACCATCTTGGATTCTCGCCTCCATACTCCCATGTAT TTCTTTCTTGGAAACCTCTCATTCTTGGACATCTGTTACACATCCTCATCCATTCCTCCA ATGCTTATTATATTTATGTCTGAGAGAAAATCCATCTCCTTCATTGGCTGTGCTCTGCAG ATGGTTGTGTCCCTTGGCTTGGGCTCCACTGAGTGTGTCCTCCTGGCTGTGATGGCCTAT GACCACTATGTGGCCATCTGCAACCCACTGAGGTACTCCATCATCATGAACGGAGTGCTG TATGTGCAAATGGCTGCATGGTCCTGGATCATAGGCTGTCTGACCTCCCTATTGCAAACA GTTCTGACAATGATGTTGCCTTTCTGTGGGAATAATGTCATTGATCATATTACCTGTGAA ATTTTGGCCCTTCTAAAACTTGTTTGTTCAGATATCACCATCAATGTGCTTATCATGACA GTGACAAATATTGTTTCACTGGTGATTCTTCTACTGTTAATTTTCATCTCCTATGTGTTT ATTCTCTCTTCCATCCTGAGAATTAATTGTGCTGAGGGAAGAAAGAAAGCCTTCTCTACC TGTTCAGCGCACTCGATTGTGGTCATCTTATTCTACGGTTCAGCCCTTTTTATGTACATG AAACCCAAGTCAAAGAACACTAATACATCTGATGAGATTATTGGGCTGTCTTATGGAGTG GTAAGCCCAATGTTAAATCCCATCATCTATAGCCTCAGGAATAAAGAGGTCAAAGAGGCT GTAAAGAAAGTCCTGAGCAGACATCTGCATTTATTGAAAATG |
| Conceptual translation |
METRNYSAMTEFFLVGLSQYPELQLFLFLLCLIMYMIILLGNSLLIIITILDSRLHTPMY FFLGNLSFLDICYTSSSIPPMLIIFMSERKSISFIGCALQMVVSLGLGSTECVLLAVMAY DHYVAICNPLRYSIIMNGVLYVQMAAWSWIIGCLTSLLQTVLTMMLPFCGNNVIDHITCE ILALLKLVCSDITINVLIMTVTNIVSLVILLLLIFISYVFILSSILRINCAEGRKKAFST CSAHSIVVILFYGSALFMYMKPKSKNTNTSDEIIGLSYGVVSPMLNPIIYSLRNKEVKEA VKKVLSRHLHLLKM Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 9 | 107,457,275 | 107,457,275 | NS | A/C | Q/H | rs10820709 (DbSNP) |
| 9 | 107,457,039 | 107,457,039 | NS | A/G | M/V | rs56241491 (DbSNP) |
| 9 | 107,456,841 | 107,456,841 | NS | A/G | M/V | rs73663505 (DbSNP) |
| 9 | 107,457,376 | 107,457,376 | NS | C/T | T/I | rs61735916 (DbSNP) |
| 9 | 107,456,928 | 107,456,928 | NS | C/T | L/F | rs56017313 (DbSNP) |
| 9 | 107,457,532 | 107,457,532 | NS | C/T | S/L | rs10761073 (DbSNP) |
| 9 | 107,457,686 | 107,457,686 | NS | G/T | E/D | rs61733820 (DbSNP) |
| 9 | 107,457,725 | 107,457,725 | SYN | A/G | L/L | rs12338899 (DbSNP) |
| 9 | 107,456,933 | 107,456,933 | SYN | C/T | L/L | rs12347076 (DbSNP) |
| 9 | 107,457,332 | 107,457,332 | SYN | C/T | T/T | rs61742675 (DbSNP) |
| 9 | 104,694,994 | 104,694,994 | NS | A/C | Q/H | 1000GP (CEU, CHBJPT) |
| 9 | 104,694,652 | 104,694,652 | SYN | C/T | L/L | 1000GP (CEU, CHBJPT) |
| 9 | 104,695,444 | 104,695,444 | SYN | G/A | L/L | 1000GP (CEU, CHBJPT) |
| 9 | 104,695,251 | 104,695,251 | NS | C/T | S/L | 1000GP (CEU, CHBJPT) |
| 9 | 104,695,051 | 104,695,051 | SYN | C/T | T/T | 1000GP (CHBJPT) |
| 9 | 100 | -100 | SYN | C/T | L/L | 1000GP (YRI, YRI, YRI) |
| 9 | 100 | -100 | NS | A/C | Q/H | 1000GP (YRI, YRI, YRI, YRI) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
| I127M | T142A | G170R | Q191H | T225I | S277L | E328D | % Freq | CORP | |
|---|---|---|---|---|---|---|---|---|---|
| 1 | I | T | G | H | T | L | E | 44.47 | 0.799 |
| 2 | I | T | G | Q | T | L | E | 26.88 | 0.799 |
| 3 | I | T | G | Q | T | S | E | 25.88 | 0.799 |
| 4 | I | T | R | H | T | L | E | 0.84 | 0.799 |
| 5 | I | T | G | H | T | L | D | 0.61 | 0.799 |
| 6 | I | T | G | Q | I | S | E | 0.61 | 0.542 |
| 7 | I | A | G | Q | T | S | E | 0.23 | 0.799 |
| 8 | I | T | G | H | T | S | E | 0.23 | 0.799 |
| 9 | M | T | G | Q | T | L | E | 0.23 | 0.799 |
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR13D1.aApr07-unspliced | main_exon | 5UTR | chr9 | 104,694,422 | 104,694,518 | + |
| CDS | chr9 | 104,694,518 | 104,695,459 | + | ||
| 3UTR | chr9 | 104,695,459 | 104,695,462 | + | ||