OR13G1 Olfactory Receptor
| Gene Symbol | OR13G11 (View this gene in GeneCards) |
| Family | 13 |
| Subfamily | G |
| Pseudogene | No |
| CORP pseudogene probability score | |
| Aliases | ORL3016 |
| External Ids | HGNC: 14999 ORDB: ORL3016 |
| Build #39 labels | |
| Chromosomal location | 1:247,672,118-247,673,041 (-) |
| Cluster | 1@248 |
| Synteny | CLIC#5 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR13A1 | 50% | 306 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR12J1 | 53% | 300 |
| Mouse | Or13g1 | 85% | 306 |
| Rat | Or13g1 | 86% | 306 |
| Cow | OR12J2 | 56% | 303 |
| Orang | OR5V1 | 43% | 300 |
| Horse | OR13G1CP | 81% | 307 |
| Horse | OR13G1BP | 81% | 307 |
| Horse | OR13G1DP | 80% | 307 |
| Horse | OR13G1EP | 81% | 298 |
| Chimp | OR13A1 | 50% | 306 |
Expression evidences
| Source | Accession |
|---|---|
| mRNA | AB529295 |
Sequence information
| Nucleotide sequence |
ATGAATCACAGCGTTGTAACTGAGTTCATTATTCTGGGCCTCACCAAAAAGCCTGAACTC CAGGGAATTATCTTCCTCTTTTTTCTCATTGTCTATCTTGTGGCTTTTCTCGGCAACATG CTCATCATCATTGCCAAAATCTATAACAACACCTTGCATACGCCCATGTATGTTTTCCTT CTGACACTGGCTGTTGTGGACATCATCTGCACAACAAGCATCATACCGAAGATGCTGGGG ACCATGCTAACATCAGAAAATACCATTTCATATGCAGGCTGCATGTCCCAGCTCTTCTTG TTCACATGGTCTCTGGGAGCTGAGATGGTTCTCTTCACCACCATGGCCTATGACCGCTAT GTGGCCATTTGTTTCCCTCTTCATTACAGTACTGTTATGAACCACCATATGTGTGTAGCC TTGCTCAGCATGGTCATGGCTATTGCAGTCACCAATTCCTGGGTGCACACAGCTCTTATC ATGAGGTTGACTTTCTGTGGGCCAAACACCATTGACCACTTCTTCTGTGAGATACCCCCA TTGCTGGCTTTGTCCTGTAGCCCTGTAAGAATCAATGAGGTGATGGTGTATGTTGCTGAT ATTACCCTGGCCATAGGGGACTTTATTCTTACCTGCATCTCCTATGGTTTTATCATTGTT GCTATTCTCCGTATCCGCACAGTAGAAGGCAAGAGGAAGGCCTTCTCAACATGCTCATCT CATCTCACAGTGGTGACCCTTTACTATTCTCCTGTAATCTACACCTATATCCGCCCTGCT TCCAGCTATACATTTGAAAGAGACAAGGTGGTAGCTGCACTCTATACTCTTGTGACTCCC ACATTAAACCCGATGGTGTACAGCTTCCAGAATAGGGAGATGCAGGCAGGAATTAGGAAG GTGTTTGCATTTCTGAAACACTAG |
| Conceptual translation |
MNHSVVTEFIILGLTKKPELQGIIFLFFLIVYLVAFLGNMLIIIAKIYNNTLHTPMYVFL LTLAVVDIICTTSIIPKMLGTMLTSENTISYAGCMSQLFLFTWSLGAEMVLFTTMAYDRY VAICFPLHYSTVMNHHMCVALLSMVMAIAVTNSWVHTALIMRLTFCGPNTIDHFFCEIPP LLALSCSPVRINEVMVYVADITLAIGDFILTCISYGFIIVAILRIRTVEGKRKAFSTCSS HLTVVTLYYSPVIYTYIRPASSYTFERDKVVAALYTLVTPTLNPMVYSFQNREMQAGIRK VFAFLKH Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 1 | 100 | -100 | NS | G/A | R/C | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI) |
| 1 | 100 | -100 | SYN | A/G | N/N | 1000GP (YRI, YRI, YRI) |
| 1 | 247,672,270 | 247,672,270 | NS | G/A | R/C | 1000GP (CHBJPT) |
| 1 | 247,672,372 | 247,672,372 | NS | G/A | R/C | 1000GP (CEU, CHBJPT) |
| 1 | 247,672,477 | 247,672,477 | NS | C/G | V/L | 1000GP (CEU) |
| 1 | 247,672,606 | 247,672,606 | NS | T/A | M/L | 1000GP (CEU, CHBJPT) |
| 1 | 247,672,648 | 247,672,648 | NS | T/C | I/V | 1000GP (CEU, CHBJPT) |
| 1 | 247,672,706 | 247,672,706 | SYN | G/A | F/F | 1000GP (CEU, CHBJPT) |
| 1 | 247,672,905 | 247,672,905 | NS | T/A | K/I | 1000GP (CEU, CHBJPT) |
| 1 | 247,835,651 | 247,835,651 | NS | C/A | K/N | rs61995673 (DbSNP) |
| 1 | 247,835,674 | 247,835,674 | NS | A/G | C/R | rs28446289 (DbSNP) |
| 1 | 247,835,728 | 247,835,728 | NS | C/T | G/R | rs28523507 (DbSNP) |
| 1 | 247,835,768 | 247,835,768 | SYN | G/A | N/N | rs61997172 (DbSNP) |
| 1 | 247,835,779 | 247,835,779 | NS | C/G | V/L | rs56096718 (DbSNP) |
| 1 | 247,835,908 | 247,835,908 | NS | A/T | L/M | rs28556931 (DbSNP) |
| 1 | 247,835,950 | 247,835,950 | NS | T/C | I/V | rs1151640 (DbSNP) |
| 1 | 247,836,008 | 247,836,008 | SYN | A/G | F/F | rs28555391 (DbSNP) |
| 1 | 247,836,074 | 247,836,074 | SYN | A/T | S/S | rs28402945 (DbSNP) |
| 1 | 247,836,078 | 247,836,078 | NS | C/A | S/I | rs61742803 (DbSNP) |
| 1 | 247,836,207 | 247,836,207 | NS | A/T | I/K | rs28711149 (DbSNP) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 1 | 247,074,430 | 248,328,835 | CopyNumber | Variation_6816 (DGV) |
| 1 | 247,714,585 | 248,277,146 | CopyNumber | Variation_3339 (DGV) |
| 1 | 247,753,207 | 248,376,070 | CopyNumber | Variation_8353 (DGV) |
| 1 | 247,753,334 | 248,322,316 | CopyNumber | Variation_2358 (DGV) |
| 1 | 247,833,420 | 247,836,443 | Deletion | #183 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
| R258C | K231N | R224C | A199T | V189L | M146L | I132V | H128R | I89S | K46I | % Freq | CORP | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | R | K | R | A | V | M | V | H | I | K | 41.01 | 0.036 |
| 2 | R | K | C | A | V | L | I | H | I | I | 31.57 | 0.036 |
| 3 | R | K | R | A | V | M | I | H | I | K | 20.12 | 0.036 |
| 4 | R | K | R | A | L | M | I | H | I | K | 2.30 | 0.036 |
| 5 | R | N | R | A | V | M | I | H | I | K | 1.69 | 0.030 |
| 6 | R | K | R | A | V | M | I | R | I | K | 1.54 | 0.036 |
| 7 | R | K | R | A | V | M | I | H | S | K | 0.77 | 0.059 |
| 8 | R | K | C | A | V | M | I | H | I | K | 0.31 | 0.036 |
| 9 | R | K | R | A | V | L | I | H | I | K | 0.15 | 0.036 |
| 10 | R | K | R | T | V | M | V | H | I | K | 0.15 | 0.036 |
| 11 | R | K | C | A | V | L | I | H | I | K | 0.15 | 0.036 |
| 12 | C | K | R | A | V | M | V | H | I | K | 0.08 | 0.036 |
| 13 | R | N | R | A | V | M | V | H | I | K | 0.08 | 0.030 |
| 14 | R | K | R | A | V | L | V | H | I | K | 0.08 | 0.036 |
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR13G1.aApr07-unspliced | main_exon | CDS | chr1 | 247,672,118 | 247,673,041 | - |