OR13J1 Olfactory Receptor
| Gene Symbol | OR13J11 (View this gene in GeneCards) |
| Family | 13 |
| Subfamily | J |
| Pseudogene | No |
| CORP pseudogene probability score | 0.69 (pseudogene) |
| Aliases | OR9-2, HsOR9.1.2, ORL3231 |
| External Ids | HGNC: 15108 GeneBank: AB065705, AF399603, AY726589, BK004442, NM_001004487 ORDB: ORL3231 |
| Build #39 labels | OR13J1 |
| Chromosomal location | 9:35,869,466-35,870,401 (-) |
| Cluster | 9@36 |
| Synteny | CLIC#17 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR13D1 | 51.47% | 307 |
| OR13D2P | 54.4% | 307 |
| OR2K2 | 53.09% | 307 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR13D2 | 55% | 304 |
| Mouse | Or13j1 | 82% | 312 |
| Rat | Or13j1 | 82% | 312 |
| Cow | OR13J1F | 85% | 312 |
| Cow | OR13J1B | 85% | 312 |
| Cow | OR13J1D | 84% | 312 |
| Orang | OR13D2 | 54% | 307 |
| Horse | OR13D2 | 54% | 307 |
| Chimp | OR13J1P | 98% | 310 |
Expression evidences
| Source | Accession |
|---|---|
| ESTs | BF946493 |
| mRNA | AY726589 |
| GNF Atlas2 | gnf1h02247_at |
Sequence information
| Nucleotide sequence |
ATGGAGCCGCTCAACAGAACAGAGGTGTCCGAGTTCTTTCTGAAAGGATTTTCTGGCTAC CCAGCCCTGGAGCATCTGCTCTTCCCTCTGTGCTCAGCCATGTACCTGGTGACCCTCCTG GGGAACACAGCCATCATGGCGGTGAGCGTGCTAGATATCCACCTGCACACGCCCGTGTAC TTCTTCCTGGGCAACCTCTCTACCCTGGACATCTGCTACACGCCCACCTTTGTGCCTCTG ATGCTGGTCCACCTCCTGTCATCCCGGAAGACCATCTCCTTTGCTGTCTGTGCCATCCAG ATGTGTCTGAGCCTGTCCACGGGCTCCACGGAGTGCCTGCTACTGGCCATCACGGCCTAT GACCGCTACCTGGCCATCTGCCAGCCACTCAGGTACCACGTGCTCATGAGCCACCGGCTC TGCGTGCTGCTGATGGGAGCTGCCTGGGTCCTCTGCCTCCTCAAGTCGGTGACTGAGATG GTCATCTCCATGAGGCTGCCCTTCTGTGGCCACCACGTGGTCAGTCACTTCACCTGCAAG ATCCTGGCAGTGCTGAAGCTGGCATGCGGCAACACGTCGGTCAGCGAAGACTTCCTGCTG GCGGGCTCCATCCTGCTGCTGCCTGTACCCCTGGCATTCATCTGCCTGTCCTACTTGCTC ATCCTGGCCACCATCCTGAGGGTGCCCTCGGCCGCCAGGTGCTGCAAAGCCTTCTCCACC TGCTTGGCACACCTGGCTGTAGTGCTGCTTTTCTACGGCACCATCATCTTCATGTACTTG AAGCCCAAGAGTAAGGAAGCCCACATCTCTGATGAGGTCTTCACAGTCCTCTATGCCATG GTCACGACCATGCTGAACCCCACCATCTACAGCCTGAGGAACAAGGAGGTGAAGGAGGCC GCCAGGAAGGTGTGGGGCAGGAGTCGGGCCTCCAGG |
| Conceptual translation |
MEPLNRTEVSEFFLKGFSGYPALEHLLFPLCSAMYLVTLLGNTAIMAVSVLDIHLHTPVY FFLGNLSTLDICYTPTFVPLMLVHLLSSRKTISFAVCAIQMCLSLSTGSTECLLLAITAY DRYLAICQPLRYHVLMSHRLCVLLMGAAWVLCLLKSVTEMVISMRLPFCGHHVVSHFTCK ILAVLKLACGNTSVSEDFLLAGSILLLPVPLAFICLSYLLILATILRVPSAARCCKAFST CLAHLAVVLLFYGTIIFMYLKPKSKEAHISDEVFTVLYAMVTTMLNPTIYSLRNKEVKEA ARKVWGRSRASR Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 9 | 35,870,001 | 35,870,001 | NS | C/T | R/H | rs7044405 (DbSNP) |
| 9 | 35,870,225 | 35,870,225 | SYN | A/G | P/P | rs72727089 (DbSNP) |
| 9 | 35,870,228 | 35,870,228 | SYN | G/A | P/P | 1000GP (CEU, CHBJPT) |
| 9 | 35,870,004 | 35,870,004 | NS | T/C | H/R | 1000GP (CEU, CHBJPT) |
| 9 | 100 | -100 | SYN | G/A | Y/Y | 1000GP (YRI, YRI, YRI) |
| 9 | 100 | -100 | NS | T/C | H/R | 1000GP (YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| CopyNumber | 117 (Hasin) | |||
| 9 | 35,867,463 | 35,870,498 | CopyNumber | #143 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
| T282A | H133R | T43I | % Freq | CORP | |
|---|---|---|---|---|---|
| 1 | T | R | T | 63.98 | 0.802 |
| 2 | T | H | T | 35.18 | 0.802 |
| 3 | T | R | I | 0.77 | 0.802 |
| 4 | A | R | T | 0.08 | 0.802 |
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR13J1.aApr07-unspliced | main_exon | 3UTR | chr9 | 35,869,463 | 35,869,466 | - |
| CDS | chr9 | 35,869,466 | 35,870,401 | - | ||