OR13Z1P Olfactory Receptor
| Gene Symbol | OR13Z1P1 (View this gene in GeneCards) |
| Family | 13 |
| Subfamily | Z |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | HsOR1.3.1P |
| External Ids | HGNC: 31240 GeneBank: NG_004405 |
| Build #39 labels | |
| Chromosomal location | 1:147,419,005-147,419,897 (+) |
| Cluster | 1@147 |
| Synteny | CLIC#3 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR13Z2P | 69.61% | 181 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|
Sequence information
| Nucleotide sequence |
TATTTTATTTATCTCCCAATATTCATTTCAGTTGAGAAAGAATTCAAAGTAGTAAATCAA ATGGTGGTCACTGAATTCATCTTTTTAAATTTTTCCAAGCACCCTGCATTACAAATGGTT TTCTTCCTGTTCTCCTTGGTCATTTACCTGATATCTCTTCTGGGAAATGCAGTCAGGGTC AGTCCTGCCTTCTATACTCCAGTGGGTTATTTTCTTAGCCACTTAAGCTTCCTGGATATC TGCTACATGTCTACCACCATCCTGGTCATGCTGGTGAACTTCTTCCAGGAGAGTAAGACC ATCTCTTATGAGGGCTGCCTTTCCCAGATCTTCTTCCTTGCATTATGAGCCAGCACTGAG GGGGTTTTGCTGGCTGCCATAGCTTATGACCACTGTGTGGCTATTTGCCACCGTCTTCAA TATAGGCTCCTAATGAGTGGAAAGGTCTATGTTTGTTTGGTGACTGGGTTTTGGATGTGT GGGCTACTCAATTCTGGGACACACACAGCACTGACAGCCACACTCACTGCGTGAACCCAA CCCCATCAGCTGCTTTCTCTGTGCCATCCCATTGCTCCTGAAGCTCTCCTGCTCAGACAC CTGTCAGTGAGTCTGTGCTCCATGTGGTGAGGGCCACCACTGGCCTGAGCCCCTGCCTGT TTATGGCAATGTCCTACATATTCATCATCTCTACCATCTTTGGAACAGACCACTTCAACT ATGACAGGCCCACAGAAGGGTGCTCCCTGGACACAGACATCCTGGTCTCTGTGCTCTTTT GTGTTGTGACCCCAGTGTTGAACCCCATCACCTACAGCCTGAGAAACAAGGAGATCAAGG GTGCAGTGATGAGGCTGACAGGAAAACATGAATTCTCTAGTGAGGTCACTGAC |
| Conceptual translation |
YFIYLPIFISVEKEFKVVNQMVVTEFIFLNFSKHPALQMVFFLFSLVIYLISLLGNAVRV SPAFYTPVGYFLSHLSFLDICYMSTTILVMLVNFFQESKTISYEGCLSQIFFLALXSTE GVLLAAIAYDHCVAICHRLQYRLLMSGKVYVCLVTGFWMCGLLNSGTHTALTATLT// EPNPISCFLCAIPLLLKLSCSDTCQXC\HVVRATTGLSPCLFMAMSYIFIISTIFGTD HFNYDRPTEGCSLDTDILVSVLFCVVTPVLNPITYSLRNKEIKGAVMRLTGKHEFSSEVT D Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 1 | 146,891,586 | 146,891,586 | SNP | A/C | rs11240034 (DbSNP) | |
| 1 | 146,890,884 | 146,890,884 | SNP | A/C | rs6657402 (DbSNP) | |
| 1 | 146,891,144 | 146,891,144 | SNP | A/G | rs11581799 (DbSNP) | |
| 1 | 146,890,784 | 146,890,784 | SNP | A/T | rs6593778 (DbSNP) | |
| 1 | 146,891,403 | 146,891,403 | SNP | A/T | rs4534446 (DbSNP) | |
| 1 | 146,891,577 | 146,891,577 | SNP | C/G | rs56257421 (DbSNP) | |
| 1 | 146,891,000 | 146,891,000 | SNP | C/T | rs11240033 (DbSNP) | |
| 1 | 146,891,408 | 146,891,408 | SNP | C/T | rs4307607 (DbSNP) | |
| 1 | 146,891,308 | 146,891,308 | SNP | C/T | rs4590726 (DbSNP) | |
| 1 | 147,419,157 | 147,419,157 | SNP | A/C | 1000GP (CEU, CHBJPT) | |
| 1 | 147,419,417 | 147,419,417 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 1 | 147,419,581 | 147,419,581 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 1 | 147,419,676 | 147,419,676 | SNP | T/A | 1000GP (CEU, CHBJPT) | |
| 1 | 147,419,681 | 147,419,681 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 1 | 147,419,859 | 147,419,859 | SNP | C/A | 1000GP (CEU, CHBJPT) | |
| 1 | 100 | -100 | SNP | T/A | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 1 | 146,884,994 | 147,083,866 | CopyNumber | Variation_4253 (DGV) |
| 1 | 145,831,974 | 147,391,604 | Inversion | Variation_29494 (DGV) |
| 1 | 146,890,968 | 146,891,193 | Del(-20) | #1(modil) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.