OR1E3P Olfactory Receptor
| Gene Symbol | OR1E3P1 (View this gene in GeneCards) |
| Family | 1 |
| Subfamily | E |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR17-7, OR17-210, HsOR17.1.3P, ORL3749 |
| External Ids | HGNC: 8191 GeneBank: AF087929, AF399437, AF546350-AF546363, BK004549, HSU04690, NG_002151 ORDB: ORL3749 |
| Build #39 labels | OR1E3P |
| Chromosomal location | 17:3,116,427-3,117,403 (+) |
| Cluster | 17@3b |
| Synteny | CLIC#39 |
| Remarks | Segregating Pseudo Gene, a polymorphism of C->del at position 54 (rs11377766) |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR1E1 | 77.24% | 312 |
| OR1E2 | 74.22% | 322 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR1E1 | 76% | 309 |
| Mouse | Or1e1b-ps | 73% | 311 |
| Rat | Or1e1 | 73% | 312 |
| Cow | OR1E1OP | 75% | 315 |
| Orang | OR1E1 | 77% | 312 |
| Horse | OR1E1L | 75% | 313 |
| Chimp | OR1E3 | 94% | 326 |
Expression evidences
| Source | Accession |
|---|---|
| GNF Atlas2 | 217224_at |
Sequence information
| Nucleotide sequence |
ATGATGAAGAAGAACCAAACCATGATCTCAGAGTTCCTGCTCCTGGGCCTTCCATCCAAC CTGAGCAGCAGAATCTGTTCTATGCCTTGTTCTTGGCCGTGTATCTTACCACCCTCCTGG GGAACCTCCTCGTCATTGTCCTCATTCGACTGGACTCCCACCTCCACATGCCTATGTATT TGTGTCTCAGCAACTTGTCCTTCTCTGACCTCTGCTTTTCCTCGGTCACAATGCCCAAAT TGCTGCAGAACATGCAGAGCCAAAACCCATCCATCCCCTTTGCGGACTGCCTGGCTCAGA TGTACTTTCATCTGTTTTATGGAGTTCTGGAGAGCTTCCTCCTTGTGGTCATGGCTTATC ACTGCTATGTGGCTATTTGCTTTCCTCTGCACTACACCACTATCATGAGCCCCAAGTGTT GCCTTGGTCTGCTGACACTCTCCTGGCTGTTGACCACTGCCCATGCCACGTTGCACACCT TGCTTATGGCCAGGCTGTCCTTTTGTGCTGAGAATGTGATTCCTCACTTTTTCTGTGATA CATCTACCTTGTTGAAGCTGGCCTGCTCCAACACGCAAGTCAATGGGTGGGTGATGTTTT TCATGGGCGGGCTCATCCTTGTCATCCCATTCCTACTCCTCATCATGTCCTGTGCAAGAA TCGTCTCCACCATCCTCAGGGTCCCTTCCACTGGGGGCATCCAGAAGGCTTTCTCCACCT GTGGCCCCCACCTCTCTGTGGTGTCTCTCTTCTATGGGACAATTATTGGTCTCTACTTGT GCCCATTGACGAATCATAACACTGTGAAGGACACTGTCATGGCTGTGATGTACACTGGGG TGACCCACATGCTGAACCCCTTCATCTACAGCCTGAGGAACAGAGACATGAGGGGGAACC CTGGGCAGAGTCTTCAGCACAAAGAAAATTTTTTTGTCTTTAAAATAGTAATAGTTGGCA TTTTACCGTTATTGAAT |
| Conceptual translation |
MMKKNQTMISEFLLLGL/IQPEQQNLFYALFLAVYLTTLLGNLLVIVLIRLDSHLHMPM YLCLSNLSFSDLCFSSVTMPKLLQNMQSQNPSIPFADCLAQMYFHLFYGVLESFLLVVMA YHCYVAICFPLHYTTIMSPKCCLGLLTLSWLLTTAHATLHTLLMARLSFCAENVIPHFFC DTSTLLKLACSNTQVNGWVMFFMGGLILVIPFLLLIMSCARIVSTILRVPSTGGIQKAFS TCGPHLSVVSLFYGTIIGLYLCPLTNHNTVKDTVMAVMYTGVTHMLNPFIYSLRNRDMRG NPGQSLQHKENFFVFKIVIVGILPLLN Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 17 | 100 | -100 | SNP | T/C | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI) | |
| 17 | 3,019,725 | 3,019,725 | SNP | C/T | rs6502692 (DbSNP) | |
| 17 | 3,019,773 | 3,019,772 | Ins(1) | -/C | rs66950405 (DbSNP) | |
| 17 | 3,019,774 | 3,019,773 | rescued_Ins(1) | -/C | rs11377766 (DbSNP) | |
| 17 | 3,019,775 | 3,019,774 | Ins(1) | -/C | rs72217858 (DbSNP) | |
| 17 | 3,019,790 | 3,019,790 | SNP | A/G | rs769433 (DbSNP) | |
| 17 | 3,019,819 | 3,019,819 | SNP | A/G | rs7213575 (DbSNP) | |
| 17 | 3,019,881 | 3,019,881 | SNP | C/T | rs7214748 (DbSNP) | |
| 17 | 3,020,003 | 3,020,003 | SNP | C/T | rs61734764 (DbSNP) | |
| 17 | 3,020,142 | 3,020,142 | SNP | C/T | rs61732249 (DbSNP) | |
| 17 | 3,020,147 | 3,020,147 | SNP | C/G | rs73976796 (DbSNP) | |
| 17 | 3,020,337 | 3,020,336 | Ins(1) | -/C | rs34961330 (DbSNP) | |
| 17 | 3,020,421 | 3,020,421 | SNP | C/G | rs61733523 (DbSNP) | |
| 17 | 3,020,652 | 3,020,652 | SNP | C/T | rs2001009 (DbSNP) | |
| 17 | 3,116,431 | 3,116,431 | SNP | T/C | 1000GP (CEU) | |
| 17 | 3,116,496 | 3,116,496 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 17 | 3,116,525 | 3,116,525 | SNP | G/A | 1000GP (CEU) | |
| 17 | 3,116,587 | 3,116,587 | SNP | C/T | 1000GP (CEU) | |
| 17 | 3,116,848 | 3,116,848 | SNP | C/T | 1000GP (CEU) | |
| 17 | 3,117,358 | 3,117,358 | SNP | T/C | 1000GP (CEU) | |
| 17 | 3,117,393 | 3,117,393 | SNP | C/T | 1000GP (CEU) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 17 | 3,009,955 | 3,022,970 | CopyNumber | Variation_49839 (DGV) |
| 17 | 3,018,447 | 3,159,865 | CopyNumber | Variation_2217 (DGV) |
| 17 | 3,019,621 | 3,022,697 | CopyNumber | #97 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.