OR1J4 Olfactory Receptor
| Gene Symbol | OR1J41 (View this gene in GeneCards) |
| Family | 1 |
| Subfamily | J |
| Pseudogene | No |
| CORP pseudogene probability score | 0.32 (functional) |
| Aliases | HSHTPCRX01, OR9-21, HsOR9.6.3, ORL38 |
| External Ids | HGNC: 8211 GeneBank: AB065718, AF399553, BK004469, HSHTPRX01, NM_001004452 ORDB: ORL38 |
| Build #39 labels | OR1J4 |
| Chromosomal location | 9:122,519,141-122,520,079 (+) |
| Cluster | 9@125 |
| Synteny | CLIC#21 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR1J1 | 74.84% | 306 |
| OR1J2 | 77.88% | 312 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR1J6P | 69% | 307 |
| Mouse | Or1j4 | 80% | 310 |
| Rat | Or1j4 | 81% | 310 |
| Cow | OR1J4C | 82% | 313 |
| Cow | OR1J4B | 81% | 313 |
| Cow | OR1J4D | 81% | 313 |
| Orang | OR1J1 | 75% | 313 |
| Horse | OR1J29 | 78% | 312 |
| Chimp | OR1J2 | 78% | 312 |
Expression evidences
| Source | Accession |
|---|---|
| mRNA | AB529305 |
| GNF Atlas2 | gnf1h07003_at |
Sequence information
| Nucleotide sequence |
ATGAAGAGGGAGAATCAGAGCAGTGTGTCTGAGTTCCTCCTCCTGGACCTCCCCATCTGG CCAGAGCAGCAGGCTGTGTTCTTCACCCTGTTCTTGGGCATGTACCTGATCACGGTGCTG GGGAACCTGCTCATCATCCTGCTCATCCGGCTGGACTCTCACCTTCACACCCCCATGTTC TTCTTCCTCAGCCACTTGGCTCTCACTGACATCTCCCTTTCATCTGTCACTGTCCCAAAG ATGTTATTAAGCATGCAAACTCAGGATCAATCCATTCTTTATGCAGGGTGTGTAACTCAG ATGTATTTTTTCATATTTTTCACTGATCTAGACAATTTCCTTCTCACTTCAATGGCATAC GATCGGTATGTGGCCATCTGTCACCCCCTCCGCTACACCACTATCATGAAAGAGGGACTG TGTAACTTACTAGTCACTGTGTCCTGGATCCTCTCCTGTACCAATGCCCTGTCTCACACT CTCCTCCTGGCCCAGCTGTCCTTTTGTGCTGACAACACCATCCCCCATTTCTTCTGTGAT CTTGTTGCCCTACTCAAGCTCTCATGCTCAGACATCTCCCTCAATGAGCTGGTCATTTTC ACAGTGGGACAGGCAGTCATTACTCTACCACTAATATGCATCTTGATCTCTTATGGCCAC ATTGGGGTCACCATCCTCAAGGCTCCATCTACTAAGGGCATCTTCAAAGCTTTGTCCACC TGTGGCTCTCACCTCTCTGTGGTGTCTCTGTATTATGGCACAATTATTGGACTGTATTTT CTCCCCTCATCCAGTGCCTCCAGTGACAAGGACGTAATTGCCTCTGTGATGTACACGGTG ATCACCCCATTGCTGAATCCCTTCATTTATAGCCTAAGGAACAGGGACATAAAGGGAGCC CTGGAGAGACTCTTCAACAGGGCAACAGTCTTATCTCAA |
| Conceptual translation |
MKRENQSSVSEFLLLDLPIWPEQQAVFFTLFLGMYLITVLGNLLIILLIRLDSHLHTPMF FFLSHLALTDISLSSVTVPKMLLSMQTQDQSILYAGCVTQMYFFIFFTDLDNFLLTSMAY DRYVAICHPLRYTTIMKEGLCNLLVTVSWILSCTNALSHTLLLAQLSFCADNTIPHFFCD LVALLKLSCSDISLNELVIFTVGQAVITLPLICILISYGHIGVTILKAPSTKGIFKALST CGSHLSVVSLYYGTIIGLYFLPSSSASSDKDVIASVMYTVITPLLNPFIYSLRNRDIKGA LERLFNRATVLSQ Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 9 | 122,519,501 | 122,519,501 | NS | G/A | D/N | 1000GP (CEU) |
| 9 | 100 | -100 | SYN | C/T | Y/Y | 1000GP (YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 9 | 125,281,320 | 125,284,358 | CopyNumber | #133 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
| L140Q | T146P | L161P | % Freq | CORP | |
|---|---|---|---|---|---|
| 1 | L | T | L | 99.46 | 0.514 |
| 2 | Q | T | L | 0.23 | 0.514 |
| 3 | L | T | P | 0.23 | 0.514 |
| 4 | L | P | L | 0.08 | 0.514 |
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR1J4.aApr07-unspliced | main_exon | CDS | chr9 | 122,519,141 | 122,520,079 | + |
| 3UTR | chr9 | 122,520,079 | 122,520,082 | + | ||