OR1J4 Olfactory Receptor
Gene Symbol | OR1J41 (View this gene in GeneCards) |
Family | 1 |
Subfamily | J |
Pseudogene | No |
CORP pseudogene probability score | 0.32 (functional) |
Aliases | HSHTPCRX01, OR9-21, HsOR9.6.3, ORL38 |
External Ids | HGNC: 8211 GeneBank: AB065718, AF399553, BK004469, HSHTPRX01, NM_001004452 ORDB: ORL38 |
Build #39 labels | OR1J4 |
Chromosomal location | 9:122,519,141-122,520,079 (+) |
Cluster | 9@125 |
Synteny | CLIC#21 |
Remarks |
Most Similar ORs in Humans (Paralogs)
Symbol | Percent | Length |
---|---|---|
OR1J1 | 74.84% | 306 |
OR1J2 | 77.88% | 312 |
Most Similar ORs in other species (Orthologs)
Specie | Symbol | Percent | Length |
---|---|---|---|
Dog | OR1J6P | 69% | 307 |
Mouse | Or1j4 | 80% | 310 |
Rat | Or1j4 | 81% | 310 |
Cow | OR1J4C | 82% | 313 |
Cow | OR1J4B | 81% | 313 |
Cow | OR1J4D | 81% | 313 |
Orang | OR1J1 | 75% | 313 |
Horse | OR1J29 | 78% | 312 |
Chimp | OR1J2 | 78% | 312 |
Expression evidences
Source | Accession |
---|---|
mRNA | AB529305 |
GNF Atlas2 | gnf1h07003_at |
Sequence information
Nucleotide sequence |
ATGAAGAGGGAGAATCAGAGCAGTGTGTCTGAGTTCCTCCTCCTGGACCTCCCCATCTGG CCAGAGCAGCAGGCTGTGTTCTTCACCCTGTTCTTGGGCATGTACCTGATCACGGTGCTG GGGAACCTGCTCATCATCCTGCTCATCCGGCTGGACTCTCACCTTCACACCCCCATGTTC TTCTTCCTCAGCCACTTGGCTCTCACTGACATCTCCCTTTCATCTGTCACTGTCCCAAAG ATGTTATTAAGCATGCAAACTCAGGATCAATCCATTCTTTATGCAGGGTGTGTAACTCAG ATGTATTTTTTCATATTTTTCACTGATCTAGACAATTTCCTTCTCACTTCAATGGCATAC GATCGGTATGTGGCCATCTGTCACCCCCTCCGCTACACCACTATCATGAAAGAGGGACTG TGTAACTTACTAGTCACTGTGTCCTGGATCCTCTCCTGTACCAATGCCCTGTCTCACACT CTCCTCCTGGCCCAGCTGTCCTTTTGTGCTGACAACACCATCCCCCATTTCTTCTGTGAT CTTGTTGCCCTACTCAAGCTCTCATGCTCAGACATCTCCCTCAATGAGCTGGTCATTTTC ACAGTGGGACAGGCAGTCATTACTCTACCACTAATATGCATCTTGATCTCTTATGGCCAC ATTGGGGTCACCATCCTCAAGGCTCCATCTACTAAGGGCATCTTCAAAGCTTTGTCCACC TGTGGCTCTCACCTCTCTGTGGTGTCTCTGTATTATGGCACAATTATTGGACTGTATTTT CTCCCCTCATCCAGTGCCTCCAGTGACAAGGACGTAATTGCCTCTGTGATGTACACGGTG ATCACCCCATTGCTGAATCCCTTCATTTATAGCCTAAGGAACAGGGACATAAAGGGAGCC CTGGAGAGACTCTTCAACAGGGCAACAGTCTTATCTCAA |
Conceptual translation |
MKRENQSSVSEFLLLDLPIWPEQQAVFFTLFLGMYLITVLGNLLIILLIRLDSHLHTPMF FFLSHLALTDISLSSVTVPKMLLSMQTQDQSILYAGCVTQMYFFIFFTDLDNFLLTSMAY DRYVAICHPLRYTTIMKEGLCNLLVTVSWILSCTNALSHTLLLAQLSFCADNTIPHFFCD LVALLKLSCSDISLNELVIFTVGQAVITLPLICILISYGHIGVTILKAPSTKGIFKALST CGSHLSVVSLYYGTIIGLYFLPSSSASSDKDVIASVMYTVITPLLNPFIYSLRNRDIKGA LERLFNRATVLSQ Protein domains and features |
Variations - SNPs
Chr | Start | End | Type | Variation | AA Change | SNP IDs |
---|---|---|---|---|---|---|
9 | 122,519,501 | 122,519,501 | NS | G/A | D/N | 1000GP (CEU) |
9 | 100 | -100 | SYN | C/T | Y/Y | 1000GP (YRI) |
Variations - CNVs
Chr | Start | End | Type | Sources |
---|---|---|---|---|
9 | 125,281,320 | 125,284,358 | CopyNumber | #133 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
L140Q | T146P | L161P | % Freq | CORP | |
---|---|---|---|---|---|
1 | L | T | L | 99.46 | 0.514 |
2 | Q | T | L | 0.23 | 0.514 |
3 | L | T | P | 0.23 | 0.514 |
4 | L | P | L | 0.08 | 0.514 |
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
Accession | Type | Chr | Start | End | Strand | |
---|---|---|---|---|---|---|
OR1J4.aApr07-unspliced | main_exon | CDS | chr9 | 122,519,141 | 122,520,079 | + |
3UTR | chr9 | 122,520,079 | 122,520,082 | + |