OR1X5P Olfactory Receptor
| Gene Symbol | OR1X5P1 (View this gene in GeneCards) |
| Family | 1 |
| Subfamily | X |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | HsOR5.3.1P |
| External Ids | HGNC: 31245 GeneBank: NG_004630, NG_004631 |
| Build #39 labels | |
| Chromosomal location | 5:177,836,413-177,837,664 (-) |
| Cluster | 5@177 |
| Synteny | CLIC#0 |
| Remarks | Disrupted by Alu repeat |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR1X1P | 92.89% | 396 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Orang | OR1X7P | 86% | 161 |
| Chimp | OR1X7P | 95% | 215 |
Expression evidences
| Source | Accession |
|---|---|
| ESTs | CD701441 |
Sequence information
| Nucleotide sequence |
ATGTCCAGGGGTAAAGAGAATGAGACAGGAGTTGGCGAGTTCCTCTTGCTCGGCATCACC AGTGACTCAGGGAAGCAGCAGGCCCTCTTCTGGCTCTTCCTGTGTATGCACTTAGTCACT GAGGCTGGAAACACACCCATCATCCTGGGCATCGGCTCCAACCTTCGCCTGCACACCCCC ATGTACTTCTTCACCCATCTCTCCTTTGTCAACATCTGCTTCATCACCAACCTGATCCCC AAGCTCCTGGTCAACCATGTGGCAGGAACAGGGATGATCTCTATGGACGATCTCTTATCC CCAGTGCCTGACTCAGATGTACTTCCTCATCTCCTTTGCCAACGTGGACACCTTTCTGCT GGCCATCATGGCACTGGACCACTATGTGGCCATCTGCAGCGCCCTGCAGTACTGCTCCAT CATCACCCCCGGCTCTGTCAGGGGCTGGCCGTGCTAGCGTGAGCAGGCTCCAGCCTCATC TCCCTGGTCCACACGGTCATCATGAGCAGACTGGCCTTCTGCTCCTCCGCCCAGATTTCA CACTTCTACCGTGACGCCTACCTGCTCATGAAGATTGCCTGCTCACATACATGACAATCA GCATGTGTTCCTGGGGGCTGTGGTCCTGTTCCTGGCTCCCTGTGCACTCATCTTGGTCTC CTACATCCGCATTGCTGCAGCCATCCTCCGGATTCCATCTCCTACAAGAAGGCGCAAGGC ATGTTCCATATGTAGCTCCCACCTGTCTCTGGTCACCCTGTTCTATGGAACTGTCCTGGG GATCTGCATATGACCCCCAGACTCCTTCTCAGCCCAGGACACCATAGCAACCATCATGTA CACTGTGGTGACCTCTATGCTAAACCCCTTCATCTACAGTCTGATGAACAAGGAGGTCCA GGAGGCCGTGAGAAGGCTCTTCAGTAGGGGCTCACACTCATCATGGTGC |
| Conceptual translation |
MSRGKENETGVGEFLLLGITSDSGKQQALFWLFLCMHLVTEAGNTPIILGIGSNLRLHTP MYFFTHLSFVNICFITNLIPKLLVN\WQEQGXLFFFFETVLLCHPGWSAVAQSQLTAS SASRVHAILLPQPPEXGLQVPATVPGXFFFFCIFSRDGVSPCXGWSPSPDLMITISY PQCLTQMYFLISFANVDTFLLAIMALDHYVAICSALQYCSIITP/LCQGLAVLAXGSS LISLVHTVIMSRLAFCSSAQISHFYRDAYLLMKIACSHTXSACVPGGC\LFLAPCALI LVSYIRIAAAILRIPSPTRRRKACSICSSHLSLVTLFYGTVLGICIXPDSFSAQDTIAT IMYTVVTSMLNPFIYSLMNKEVQEAVRRLFSRGSHSSWC Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 5 | 177,264,222 | 177,264,222 | Del(1) | -/A | rs66704408 (DbSNP) | |
| 5 | 177,264,208 | 177,264,209 | Del(2) | -/AA | rs72024936 (DbSNP) | |
| 5 | 177,264,386 | 177,264,385 | Ins(2) | -/AA | rs72357889 (DbSNP) | |
| 5 | 177,264,381 | 177,264,380 | Ins(2) | -/AA | rs72184524 (DbSNP) | |
| 5 | 177,264,385 | 177,264,384 | Ins(2) | -/AA | rs57299378 (DbSNP) | |
| 5 | 177,264,236 | 177,264,236 | SNP | A/G | rs12522055 (DbSNP) | |
| 5 | 177,263,769 | 177,263,769 | SNP | A/T | rs7443880 (DbSNP) | |
| 5 | 177,263,717 | 177,263,717 | SNP | C/T | rs7443871 (DbSNP) | |
| 5 | 177,264,170 | 177,264,170 | SNP | C/T | rs62399480 (DbSNP) | |
| 5 | 177,263,666 | 177,263,666 | SNP | G/T | rs7443843 (DbSNP) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 5 | 177,261,414 | 177,264,765 | Deletion | #266 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.