OR2A9P Olfactory Receptor
| Gene Symbol | OR2A9P1 (View this gene in GeneCards) |
| Family | 2 |
| Subfamily | A |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | HSDJ0798C17, OR7-86, OR7-17, HsOR7.6.22P, ORL3203 |
| External Ids | HGNC: 8236 GeneBank: AB065477, AB065610, AF399463, AF546392-AF546405, BK004757, NR_002157, NR_002158, U86282 ORDB: ORL3203 |
| Build #39 labels | OR2A9P |
| Chromosomal location | 7:144,299,373-144,300,302 (+) |
| Cluster | 7@144 |
| Synteny | CLIC#16 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR2A20P | 100% | 310 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR2A9 | 86% | 310 |
| Dog | OR2A9B | 85% | 310 |
| Mouse | Or2a20 | 81% | 310 |
| Rat | Or2a20 | 81% | 310 |
| Cow | OR2A5 | 79% | 307 |
| Orang | OR2A9 | 91% | 310 |
| Orang | OR2A42 | 89% | 310 |
| Horse | OR2A9 | 87% | 310 |
| Horse | OR2A9BP | 85% | 309 |
| Chimp | OR2A42 | 91% | 310 |
Expression evidences
| Source | Accession |
|---|---|
| ESTs | W03780 |
| mRNA | AB464440 |
Sequence information
| Nucleotide sequence |
ATGGTGAAAAATCAGACAATGGTCACAGAGTTCCTCCTACTGGGATTTCTCCTGGGCCCA AGGATTCAGATGCTCCTCTTTGGGCTCTTCTCCCTGTTCTATGTCTTCACCCTGCTGGGG AATGGGACCATCCTGGGGCTCATCTCACTGGACTCCAGACTCCACACCCCCATGTACTTC TTCCTCTCACACCTGGCCGTCGTCAACATCGCCTATGCCTGCAACACAGTGCCCCAGATG CTGGTGAACCTCCTGCATCCAGCCAAGCCCATCTCCTTTGCTGGCTGCATGACATAGACC TTTCTCTTTTTGAGTTTTGCACATACTGAATGCCTCCTGTTGGTGCTGATGTCCTACGAT CGGTACGTGGCCATCTGCCACCCTCTCCGATATTTCATCATCATGACCTGGAAAGTCTGC ATCACTCTGGCCATCACTTCCTGGACATGTGGCTCCCTCCTGGCTATGGTCCATGTGAGC CTCATCCTAAGACTGCCCTTTTGTGGGCCTCGTGAAATCAACCACTTCTTCTGTGAAATC CTGTCTGTCCTCAGGCTGGCCTGTGCTGATACCTGGCTCAACCAGGTGGTCATCTTTGCA GCCTGCATGTTCATCCTGGTGGGACCACTCTGCCTGGTGCTGGTCTCCTACTCACACATC CTGGCGGCCATCCTGAGGATCCAGTCTGGGGAGGGCCGCAGAAAGGCCTTCTCCACCTGC TCCTCCCACCTCTGCGTAGTGGGACTCTTCTTTGGCAGCGCCATCGTCATGTACATGGCC CCTAAGTCCCGCCATCCTGAGGAGCAGCAGAAGGTCCTTTTTCTATTTTACAGTTCTTTC AACCCGATGCTAAACCCCCTGATTTACAACCTGAGGAATGTAGAGGTCAAGGGTGCCCTG AGGAGAGCACTGTGCAAGGAAAGTCATTCC |
| Conceptual translation |
MVKNQTMVTEFLLLGFLLGPRIQMLLFGLFSLFYVFTLLGNGTILGLISLDSRLHTPMYF FLSHLAVVNIAYACNTVPQMLVNLLHPAKPISFAGCMTXFLFLSFAHTECLLLVLMSYD RYVAICHPLRYFIIMTWKVCITLAITSWTCGSLLAMVHVSLILRLPFCGPREINHFFCEI LSVLRLACADTWLNQVVIFAACMFILVGPLCLVLVSYSHILAAILRIQSGEGRRKAFSTC SSHLCVVGLFFGSAIVMYMAPKSRHPEEQQKVLFLFYSSFNPMLNPLIYNLRNVEVKGAL RRALCKESHS Protein domains and features |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 7 | 143,905,946 | 144,059,816 | CopyNumber | Variation_0726 (DGV), Variation_2110 (DGV) |
| 7 | 143,147,775 | 144,368,638 | CopyNumber | Variation_3708 (DGV) |
| 7 | 143,879,547 | 144,073,724 | CopyNumber | Variation_4571 (DGV) |
| 7 | 143,878,837 | 144,073,622 | CopyNumber | Variation_31398 (DGV) |
| 7 | 143,217,296 | 144,074,520 | CopyNumber | Variation_32962 (DGV) |
| 7 | 143,873,741 | 144,029,792 | Inversion | Variation_37282 (DGV) |
| 7 | 143,947,032 | 144,038,091 | Inversion | Variation_37283 (DGV) |
| 7 | 143,972,874 | 144,109,520 | Inversion | Variation_37284 (DGV) |
| 7 | 143,887,276 | 144,027,539 | CopyNumber | Variation_37567 (DGV) |
| 7 | 143,877,475 | 144,074,275 | CopyNumber | Variation_59622 (DGV) |
| 7 | 143,945,278 | 143,999,781 | Inversion | Variation_59845 (DGV) |
| 7 | 143,993,383 | 144,034,914 | CopyNumber | Variation_70057 (DGV) |
| 7 | 143,877,476 | 144,074,583 | CopyNumber | Variation_70058 (DGV) |
| 7 | 143,963,153 | 144,073,285 | CopyNumber | Variation_82244 (DGV), Variation_94944 (DGV) |
| 7 | 143,994,640 | 144,030,630 | CopyNumber | Variation_82245 (DGV) |
| CopyNumber | 159 (Hasin) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.