OR2AI1P Olfactory Receptor
| Gene Symbol | OR2AI1P1 (View this gene in GeneCards) |
| Family | 2 |
| Subfamily | AI |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR5-1, HsOR5.4.1P, ORL3133 |
| External Ids | HGNC: 15063 GeneBank: AB065466, AF399494, BK004584, NG_004289 ORDB: ORL3133 |
| Build #39 labels | OR2AI1P |
| Chromosomal location | 5:180,692,835-180,693,763 (-) |
| Cluster | 5@180 |
| Synteny | CLIC#11 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR2J3 | 55.12% | 303 |
| OR2W6P | 54.75% | 305 |
| OR2Y1 | 54.07% | 307 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR2AI2 | 68% | 310 |
| Mouse | Or2w6 | 56% | 310 |
| Rat | Or2w6 | 57% | 310 |
| Cow | OR2C3B | 54% | 309 |
| Orang | OR2C3 | 54% | 309 |
| Horse | OR2AI1 | 81% | 310 |
| Chimp | OR2AI1 | 90% | 315 |
Sequence information
| Nucleotide sequence |
ATGATGAAAATAAATGACAGCTCAGGGGAAGACTTCATCTTAGTTGGCTTCTCAGAATAT CCCCAGGCTGAGTTCATCCTTTCTCTGTTTGTCTCCGGGTTCTACACCATGACATTCACA GGGAACACAGCCATCATCTTGGTCTCTCTGCTGGACTACCGGCTCCGCACCCCAATGTAC TTCTTCCTCCGAAAGCTCTCATTTCTGGACATGTGTTTCACCACCTGCATTGTCCTTCAG ATGCTGGTGAACATCTGGGGAGAGAGTAAGAAGGTCAGCTATGTAGGCTGCATGGTTCAG TATTCTGTAGCCTTGGCTCTTGGCTCCACAGAGTGTGTGCTTCTTGCTATCATGGCTGTG GACCGTTATGTTGCCGTCCGCTGGCCCCTTCACTATGTTACAATCATGCACCAACAGATC TGCCACTTTCTCGCAGCCTTGTCCTGGTTTTCTGGGTTAGCCAACTCTCTCTTTCACTCT TCACTAACCACCATTTTGCCTCTGTGTGGCCACCGCCGTGTGGACCATTTCTTTGTGAGG TCCTGCTCATTGTCAAGCTGTCCTGCGTGGACACCGGCCCAACTGAATTGAAGATGTTAA TTGCTCGTGTGATCATCCTTGCCCTTCCAGTGTGCACCATCCTCACCTCCTATGCCTGCA TTGCCAGGGCTGTGCTGAGGCTGCAGTCTGCTGAAGGTCAGCAGAAGGCCTTTGGGACTT GTGCCTCCCACCTGATGGTGGTCTTGCTGTTCTATGGAACCATCATGTTCATGTGTCTTC AGCTGAAGAGTAACTACTCTCAGATTCAGGGAAAGCTGCTTCCTCTTGTTTATACCATTG CTGCCCCCACCTAGAACCCACTAATCTATGCACTGAGGAACAAAGTTGTAAAGAGGGCAA TTGGAAAATTGATCTGGAAGGATTCAGTT |
| Conceptual translation |
MMKINDSSGEDFILVGFSEYPQAEFILSLFVSGFYTMTFTGNTAIILVSLLDYRLRTPMY FFLRKLSFLDMCFTTCIVLQMLVNIWGESKKVSYVGCMVQYSVALALGSTECVLLAIMAV DRYVAVRWPLHYVTIMHQQICHFLAALSWFSGLANSLFHSSLTTILPLCGHRRVDHF/C EVLLIVKLSCVDTGPTELKMLIARVIILALPVCTILTSYACIARAVLRLQSAEGQQKAFG TCASHLMVVLLFYGTIMFMCLQLKSNYSQIQGKLLPLVYTIAAPTXPLIYALRNKVVKR AIGKLIWKDSV Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 5 | 180,120,044 | 180,120,044 | SNP | A/G | rs13188129 (DbSNP) | |
| 5 | 180,119,918 | 180,119,918 | SNP | A/G | rs10055973 (DbSNP) | |
| 5 | 180,120,528 | 180,120,528 | SNP | A/G | rs6601136 (DbSNP) | |
| 5 | 180,120,738 | 180,120,738 | SNP | C/G | rs10073529 (DbSNP) | |
| 5 | 180,119,948 | 180,119,948 | SNP | C/G | rs60350100 (DbSNP) | |
| 5 | 180,120,226 | 180,120,226 | SNP | C/T | rs7341096 (DbSNP) | |
| 5 | 180,120,068 | 180,120,068 | SNP | C/T | rs10071630 (DbSNP) | |
| 5 | 180,120,085 | 180,120,085 | SNP | C/T | rs57118750 (DbSNP) | |
| 5 | 180,120,149 | 180,120,149 | SNP | C/T | rs11738216 (DbSNP) | |
| 5 | 180,120,010 | 180,120,010 | SNP | C/T | rs11738161 (DbSNP) | |
| 5 | 180,120,192 | 180,120,192 | SNP | G/T | rs7731780 (DbSNP) | |
| 5 | 180,692,918 | 180,692,918 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 5 | 180,693,010 | 180,693,010 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 5 | 180,693,044 | 180,693,044 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 5 | 180,693,140 | 180,693,140 | SNP | G/A | 1000GP (CEU) | |
| 5 | 180,693,149 | 180,693,149 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 5 | 180,693,192 | 180,693,192 | SNP | G/T | 1000GP (CEU, CHBJPT) | |
| 5 | 180,693,528 | 180,693,528 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 5 | 180,693,738 | 180,693,738 | SNP | C/G | 1000GP (CEU, CHBJPT) | |
| 5 | 180,693,175 | 180,693,175 | SNP | A/T | 1000GP (CHBJPT) | |
| 5 | 180,693,507 | 180,693,507 | SNP | C/A | 1000GP (CHBJPT) | |
| 5 | 100 | -100 | SNP | G/A | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 5 | 180,079,970 | 180,245,224 | CopyNumber | Variation_2612 (DGV) |
| 5 | 180,087,198 | 180,281,476 | CopyNumber | Variation_3592 (DGV) |
| CopyNumber | 158 (Hasin) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.