OR2AT2P Olfactory Receptor
| Gene Symbol | OR2AT2P1 (View this gene in GeneCards) |
| Family | 2 |
| Subfamily | AT |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR11-263, HsOR11.16.1P |
| External Ids | HGNC: 19619 GeneBank: AB065591, BK004709, NG_004337 |
| Build #39 labels | OR2AT2P |
| Chromosomal location | 11:75,071,120-75,072,091 (-) |
| Cluster | 11@75 |
| Synteny | CLIC#28 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR2AT1P | 86.56% | 253 |
| OR2AT4 | 82.52% | 309 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR2AT2 | 87% | 310 |
| Mouse | Or2at1 | 83% | 321 |
| Mouse | Or2at4 | 82% | 309 |
| Rat | Or2at1 | 85% | 321 |
| Cow | OR2AT2B | 81% | 322 |
| Cow | OR2AT2 | 82% | 314 |
| Orang | OR2AT4 | 82% | 309 |
| Horse | OR2AT2 | 85% | 320 |
| Chimp | OR2AT4 | 83% | 309 |
Expression evidences
| Source | Accession |
|---|---|
| ESTs | AL138460 |
| GNF Atlas2 | gnf1h05789_s_at |
| GNF Atlas2 | gnf1h10563_at |
Sequence information
| Nucleotide sequence |
ATGGAAACAATCACCTGTAATGGATCAGGGGACTCCTCAACCACCTTCTACCTTATGGGC ATCCCCTCTCTGCCAAAATCCCTTTTCCTTCCTATTTTCTTTGTCTTTCTCCTCCTCTAC GTGCTCATCCTGATGGGTAATACCTTTATCCTGGTGGCTGTGGTGGCCAAGCCCAGCCTC CACAAGCCCATGTACTTCTTCCTGATAAACCTCTCCACCTTGGACATTCTTGTTACCACA ACCACTGTCCCCAAGATGCTGTCCCTGTTCTTGTTTGGGGACAGCTTCCTCAGCTTCCCT GCCTGCTTCCTGCAGATGTACCTGTTCCACAGCTTCTCCTGCTCAGAAGCCTTCATCCTG GTGGTCATGGCCTATGACCGCTATGTGGCTATCTGCCGCCCACTGCACTACCCTGTCCTC ATGACCCCTCAGACCAACACTGTCTTGACAACCAGTGCCTGGCTCACTGCCCTCCTCCTG CCCATTCCAGCAGTGGTACAGACCTCCCAGATGGCATTTGACATCATTGTCCACATCTAC CACTGCTTCTGTGACCACCTGGCTGTGGTCCAGGCCTCCTGCTCTGACACCACCCCCAGA CCTTCATGGGCTTCTGCATCGCCATGGTGGTGTCCTTCCTCCCCCTTCTGCTGGTGCTTC TCTCCTATGCCCACATCTTGACCTCAGTGCTTTGCATCAACTGCCAAGAAGGACGCTCCA AAGCCTTCTCCACCTGCAGCTCCCACCTCCTGGTGGTGGGCACCTACTATTCATCCATTG CCATAGCCTATGTGGCCTACAGGGCTGACCTGCCCCTAGACTTCCACGTCATGGGCAATG TGGTATATGCCATTCTCACACCTGTTCTCAACCCTGTCATCTACAAACTGAGGAACAAGG ATGTCAAAGCAGCCATCACCAAGATTGCATGTCCCCAGGAGCCAAAGAATGCTAGGAAAC CCTGATTCAAAG |
| Conceptual translation |
METITCNGSGDSSTTFYLMGIPSLPKSLFLPIFFVFLLLYVLILMGNTFILVAVVAKPSL HKPMYFFLINLSTLDILVTTTTVPKMLSLFLFGDSFLSFPACFLQMYLFHSFSCSEAFIL VVMAYDRYVAICRPLHYPVLMTPQTNTVLTTSAWLTALLLPIPAVVQTSQMAFDIIVHIY HCFCDHLAVVQASCSDT/PQTFMGFCIAMVVSFLPLLLVLLSYAHILTSVLCINCQEGR SKAFSTCSSHLLVVGTYYSSIAIAYVAYRADLPLDFHVMGNVVYAILTPVLNPVIYKLRN KDVKAAITKIA\PRSQRMLGNPDSK Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 74,782,709 | 74,782,708 | Ins(1) | -/G | rs34983444 (DbSNP) | |
| 11 | 74,782,989 | 74,782,989 | SNP | C/T | rs72992691 (DbSNP) | |
| 11 | 75,071,944 | 75,071,944 | SNP | T/C | 1000GP (CEU) | |
| 11 | 100 | -100 | SNP | G/C | 1000GP (YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| CopyNumber | 216 (Hasin) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR2AT2P.aApr07-unspliced | main_exon | 3UTR | chr11 | 75,070,942 | 75,071,120 | - |
| CDS_partial | chr11 | 75,071,120 | 75,071,361 | - | ||