OR2B7P Olfactory Receptor
| Gene Symbol | OR2B7P1 (View this gene in GeneCards) |
| Family | 2 |
| Subfamily | B |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR6-7, OR6-8, OR6-9, dJ313I6.3, hs6M1-31P, HsOR6.2.6P, ORL3161 |
| External Ids | HGNC: 13967 GeneBank: AB065469, AF399499, BK004559, BK004613, BK004742, NG_004280 ORDB: ORL3161 |
| Build #39 labels | OR2B7P |
| Chromosomal location | 6:28,046,434-28,047,368 (+) |
| Cluster | 6@28a |
| Synteny | CLIC#12 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR2B8P | 61.41% | 311 |
| OR2G3 | 59.02% | 305 |
| OR2W6P | 59.28% | 307 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR2B7 | 85% | 310 |
| Mouse | Or2b7 | 81% | 323 |
| Rat | Or2y1c | 62% | 310 |
| Cow | OR2B7 | 89% | 310 |
| Cow | OR2B7B | 88% | 310 |
| Cow | OR2B7C | 88% | 310 |
| Orang | OR2B6 | 63% | 307 |
| Horse | OR2B7 | 92% | 310 |
| Chimp | OR2B6 | 62% | 307 |
Expression evidences
| Source | Accession |
|---|---|
| GNF Atlas2 | gnf1h11129_at |
Sequence information
| Nucleotide sequence |
ATGGAAAGAGCTAACGACAGCACCTTCTCTGGATTCATCCTCCTGGGCTTCTCCAACAGG CCTCAGCTGGAAACAGCTCTCTTTGTGGTCATCTTGATCATCTACTTTCTGAGCTTTCTG GGCAATGGCACCATTATACTTTTATCCATTGTAGATCCTCGCCTCCATACCCCTATGTAT TTCTTCCTCTCCAATCTCTCTTTTATGGATCTTTGTTTGACCACTTGTACTGTCCCTCAG ACACTGGTCAACTTTAAGGGGAAGGACAAGACCATCACCTATGGTGGCTGCGTGACCCAG CTATTCATTGCCTTGGGACTCGGGGGGAGTGGAGTGTGTCTTATTGTCTGCCATGGCCTA TGACCGCTATGCAGCCGTCTGCCGCCCACTCCACTACATGGTGAGCATGCATCCCCAACT TTGCTTGCAGTTGGTTGTAACCACTTGGCTCACAGGGTTTGGCAATTCTGTGATACAGAC AGCATTGACCATGACTCTCCCCCTCTGTGATAAAAACCAAGTGGATCATTTCTTCTGTGA AGTTCCAGTGATGCTGAAACTGTCCTGCACCAACACCTCCATCAACGAGGCTGAAATCTT TGCTGTCAGTGTCTTCTTCTTGGTGGTGCCTCTCTCACTCATCTTAGCATCCTATGGTCA CATTACTCATGCAGTCCTGAAGATAAAGTCAGCTCAAGGGAGGCAGAAGGCTTTTGGAAC CTGTGGTTCTCACCTCCTGGTAGTGATCATTTTCTTTGGGACACTCATCTCCATGTACCT CCAGCCTCCCTCCAGTTATTCACAGGATGTGAACAAAAGCATTGCACTCTTCTATACTCT GGTGACTCCTCTACTGAATCCCCTAATTTACACTCTGAGGAACAAGGAAGTCAAAGGGGC AACTAAGAAGACTAGTGGGGAGGACCATAGATGCA |
| Conceptual translation |
MERANDSTFSGFILLGFSNRPQLETALFVVILIIYFLSFLGNGTIILLSIVDPRLHTPMY FFLSNLSFMDLCLTTCTVPQTLVNFKGKDKTITYGGCVTQLFIALGLGGS\CVLLSAMA YDRYAAVCRPLHYMVSMHPQLCLQLVVTTWLTGFGNSVIQTALTMTLPLCDKNQVDHFFC EVPVMLKLSCTNTSINEAEIFAVSVFFLVVPLSLILASYGHITHAVLKIKSAQGRQKAFG TCGSHLLVVIIFFGTLISMYLQPPSSYSQDVNKSIALFYTLVTPLLNPLIYTLRNKEVKG ATKK\VGRTIDA Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 6 | 28,015,112 | 28,015,112 | Del(1) | -/A | rs35572414 (DbSNP) | |
| 6 | 28,015,113 | 28,015,113 | Del(1) | -/A | rs70983928 (DbSNP) | |
| 6 | 28,014,577 | 28,014,577 | SNP | A/G | rs16893601 (DbSNP) | |
| 6 | 28,014,534 | 28,014,534 | SNP | C/G | rs12530187 (DbSNP) | |
| 6 | 28,014,597 | 28,014,597 | SNP | C/T | rs149900 (DbSNP) | |
| 6 | 28,014,463 | 28,014,463 | SNP | C/T | rs12530158 (DbSNP) | |
| 6 | 28,046,819 | 28,046,819 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 6 | 28,046,838 | 28,046,838 | SNP | G/T | 1000GP (CEU, CHBJPT) | |
| 6 | 28,046,685 | 28,046,685 | SNP | C/T | 1000GP (CHBJPT) | |
| 6 | 28,046,799 | 28,046,799 | SNP | G/A | 1000GP (CHBJPT) | |
| 6 | 100 | -100 | SNP | G/A | 1000GP (YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 6 | 28,014,112 | 28,017,146 | CopyNumber | #111 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.