OR2B7P Olfactory Receptor
Gene Symbol | OR2B7P1 (View this gene in GeneCards) |
Family | 2 |
Subfamily | B |
Pseudogene | Yes |
CORP pseudogene probability score | |
Aliases | OR6-7, OR6-8, OR6-9, dJ313I6.3, hs6M1-31P, HsOR6.2.6P, ORL3161 |
External Ids | HGNC: 13967 GeneBank: AB065469, AF399499, BK004559, BK004613, BK004742, NG_004280 ORDB: ORL3161 |
Build #39 labels | OR2B7P |
Chromosomal location | 6:28,046,434-28,047,368 (+) |
Cluster | 6@28a |
Synteny | CLIC#12 |
Remarks |
Most Similar ORs in Humans (Paralogs)
Symbol | Percent | Length |
---|---|---|
OR2B8P | 61.41% | 311 |
OR2G3 | 59.02% | 305 |
OR2W6P | 59.28% | 307 |
Most Similar ORs in other species (Orthologs)
Specie | Symbol | Percent | Length |
---|---|---|---|
Dog | OR2B7 | 85% | 310 |
Mouse | Or2b7 | 81% | 323 |
Rat | Or2y1c | 62% | 310 |
Cow | OR2B7 | 89% | 310 |
Cow | OR2B7B | 88% | 310 |
Cow | OR2B7C | 88% | 310 |
Orang | OR2B6 | 63% | 307 |
Horse | OR2B7 | 92% | 310 |
Chimp | OR2B6 | 62% | 307 |
Expression evidences
Source | Accession |
---|---|
GNF Atlas2 | gnf1h11129_at |
Sequence information
Nucleotide sequence |
ATGGAAAGAGCTAACGACAGCACCTTCTCTGGATTCATCCTCCTGGGCTTCTCCAACAGG CCTCAGCTGGAAACAGCTCTCTTTGTGGTCATCTTGATCATCTACTTTCTGAGCTTTCTG GGCAATGGCACCATTATACTTTTATCCATTGTAGATCCTCGCCTCCATACCCCTATGTAT TTCTTCCTCTCCAATCTCTCTTTTATGGATCTTTGTTTGACCACTTGTACTGTCCCTCAG ACACTGGTCAACTTTAAGGGGAAGGACAAGACCATCACCTATGGTGGCTGCGTGACCCAG CTATTCATTGCCTTGGGACTCGGGGGGAGTGGAGTGTGTCTTATTGTCTGCCATGGCCTA TGACCGCTATGCAGCCGTCTGCCGCCCACTCCACTACATGGTGAGCATGCATCCCCAACT TTGCTTGCAGTTGGTTGTAACCACTTGGCTCACAGGGTTTGGCAATTCTGTGATACAGAC AGCATTGACCATGACTCTCCCCCTCTGTGATAAAAACCAAGTGGATCATTTCTTCTGTGA AGTTCCAGTGATGCTGAAACTGTCCTGCACCAACACCTCCATCAACGAGGCTGAAATCTT TGCTGTCAGTGTCTTCTTCTTGGTGGTGCCTCTCTCACTCATCTTAGCATCCTATGGTCA CATTACTCATGCAGTCCTGAAGATAAAGTCAGCTCAAGGGAGGCAGAAGGCTTTTGGAAC CTGTGGTTCTCACCTCCTGGTAGTGATCATTTTCTTTGGGACACTCATCTCCATGTACCT CCAGCCTCCCTCCAGTTATTCACAGGATGTGAACAAAAGCATTGCACTCTTCTATACTCT GGTGACTCCTCTACTGAATCCCCTAATTTACACTCTGAGGAACAAGGAAGTCAAAGGGGC AACTAAGAAGACTAGTGGGGAGGACCATAGATGCA |
Conceptual translation |
MERANDSTFSGFILLGFSNRPQLETALFVVILIIYFLSFLGNGTIILLSIVDPRLHTPMY FFLSNLSFMDLCLTTCTVPQTLVNFKGKDKTITYGGCVTQLFIALGLGGS\CVLLSAMA YDRYAAVCRPLHYMVSMHPQLCLQLVVTTWLTGFGNSVIQTALTMTLPLCDKNQVDHFFC EVPVMLKLSCTNTSINEAEIFAVSVFFLVVPLSLILASYGHITHAVLKIKSAQGRQKAFG TCGSHLLVVIIFFGTLISMYLQPPSSYSQDVNKSIALFYTLVTPLLNPLIYTLRNKEVKG ATKK\VGRTIDA Protein domains and features |
Variations - SNPs
Chr | Start | End | Type | Variation | AA Change | SNP IDs |
---|---|---|---|---|---|---|
6 | 28,015,112 | 28,015,112 | Del(1) | -/A | rs35572414 (DbSNP) | |
6 | 28,015,113 | 28,015,113 | Del(1) | -/A | rs70983928 (DbSNP) | |
6 | 28,014,577 | 28,014,577 | SNP | A/G | rs16893601 (DbSNP) | |
6 | 28,014,534 | 28,014,534 | SNP | C/G | rs12530187 (DbSNP) | |
6 | 28,014,597 | 28,014,597 | SNP | C/T | rs149900 (DbSNP) | |
6 | 28,014,463 | 28,014,463 | SNP | C/T | rs12530158 (DbSNP) | |
6 | 28,046,819 | 28,046,819 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
6 | 28,046,838 | 28,046,838 | SNP | G/T | 1000GP (CEU, CHBJPT) | |
6 | 28,046,685 | 28,046,685 | SNP | C/T | 1000GP (CHBJPT) | |
6 | 28,046,799 | 28,046,799 | SNP | G/A | 1000GP (CHBJPT) | |
6 | 100 | -100 | SNP | G/A | 1000GP (YRI, YRI, YRI) |
Variations - CNVs
Chr | Start | End | Type | Sources |
---|---|---|---|---|
6 | 28,014,112 | 28,017,146 | CopyNumber | #111 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.