OR2H4P Olfactory Receptor
| Gene Symbol | OR2H4P1 (View this gene in GeneCards) |
| Family | 2 |
| Subfamily | H |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR6-21, dJ80I19.6, OR6-3, hs6M1-7, HsOR6.3.10P, ORL3168 |
| External Ids | HGNC: 8255 GeneBank: AB065473, BK004723, HSA302634-HSA302643, NG_004685 ORDB: ORL3168 |
| Build #39 labels | OR2H4P |
| Chromosomal location | 6:29,215,236-29,216,176 (+) |
| Cluster | 6@29 |
| Synteny | CLIC#12 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR2H1 | 58.01% | 312 |
| OR2H2 | 62.25% | 302 |
| OR2W6P | 59.86% | 294 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR2W6 | 59% | 301 |
| Mouse | Or2h15 | 78% | 313 |
| Rat | Or2h15 | 76% | 313 |
| Cow | OR2H4B | 81% | 314 |
| Orang | OR2H4 | 94% | 314 |
| Horse | OR2H4 | 85% | 314 |
| Chimp | OR2H5P | 59% | 302 |
Sequence information
| Nucleotide sequence |
ATGATTATAATTTGCAATGACAGCCACAGTGATTTCATCCTTCTGGGCTTCTCTAACAAG CCACATTTGGAGAAGATACTTTTTGGATCATTTTTATTTTTTATTTTTTGACTCTTGCAG GAAATATGGTCATAGTTCTTGTGTCCTTGAAGGATCCAAAACTCCACATCCCTATGTATT TCTTTCTTTCCAACCTTTCCTTGGTAGACCTCTGTTTGACCAGCAGCTGTGTTCCACAGA TGTTGATTAACTTCTGGGGCCCAGAAAAGACCATCAGCTACATTGGCTGTGCCATTCAAC TCTATGTTTTTTTGTGGCTTGGGGCCACGGAATATGTCCTTCTTGTTGTCATGGCTGTGG ATTGTTATGTAGCAGTGTGTCATCCACTGCAAAATACCATGATCATGCACCCAAAACTTT GTCTGCAGCTGGCTATCTTGGCATGGGGGACTGGCTTGGCCCAGTCTCTGATCCAGTCCC CTGCCACCCTCCGGTTACCCTTCTGCTCCCAGCGGATGGTGGATGATGTTGTTTGTGAAG TCCCAGCTCTGATTCAGCTCTCCAGTACTGATACTACCTACAGTGAAATTCAGATGTCTA TCGCCAGTGTTGTCCTCCTGGTGATGCCCTTGATCATTATCCTTTCCTCTTCTGGTGCTA TTGCTAAGGCTGTGCTGAGAATTAAGTCAACTGCAGGACAGAAGAAAGCATTTGGCACCT GCATCTCTCACCTTCTTGTGGTTTCTCTCTTTTATGGCACTGTCACAGGTGTCTACCTTC AACCAAAAAATCACTATCCTCATGAATGGGGCAAATTTCTCACTCTTTTCTACACTGTAG TAACCCCAACTCTTAATCCCCTCATCTACACTCTAAGGAACAAGGAGGTAAAGGGAGCAC TAATAAGATTGGGGAGGAGGACCTGGGATTCCCAGAATAAC |
| Conceptual translation |
MIIICNDSHSDFILLGFSNKPHLEKILF/IIFIFYFLTLAGNMVIVLVSLKDPKLHIPM YFFLSNLSLVDLCLTSSCVPQMLINFWGPEKTISYIGCAIQLYVFLWLGATEYVLLVVMA VDCYVAVCHPLQNTMIMHPKLCLQLAILAWGTGLAQSLIQSPATLRLPFCSQRMVDDVVC EVPALIQLSSTDTTYSEIQMSIASVVLLVMPLIIILSSSGAIAKAVLRIKSTAGQKKAFG TCISHLLVVSLFYGTVTGVYLQPKNHYPHEWGKFLTLFYTVVTPTLNPLIYTLRNKEVKG ALIRLGRRTWDSQNN Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 6 | 29,183,346 | 29,183,346 | SNP | A/G | rs3129096 (DbSNP) | |
| 6 | 29,183,869 | 29,183,869 | SNP | A/T | rs11758554 (DbSNP) | |
| 6 | 29,215,569 | 29,215,569 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 6 | 100 | -100 | SNP | G/A | 1000GP (YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| CopyNumber | 3 (Hasin) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.