OR2L1P Olfactory Receptor
| Gene Symbol | OR2L1P1 (View this gene in GeneCards) |
| Family | 2 |
| Subfamily | L |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | HSHTPCRX02, HsOR1.5.21P |
| External Ids | HGNC: 8265 GeneBank: AB065442, AF546406-AF546419, HSHTPRX02, NR_002145 |
| Build #39 labels | OR2L1, OR2L7P |
| Chromosomal location | 1:247,990,267-247,991,191 (+) |
| Cluster | 1@248 |
| Synteny | CLIC#5 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR2L2 | 90.26% | 308 |
| OR2L3 | 87.62% | 307 |
| OR2L5 | 90.26% | 308 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR2L3B | 83% | 306 |
| Dog | OR2L5 | 82% | 307 |
| Dog | OR2L5C | 81% | 307 |
| Mouse | Or2l5 | 80% | 307 |
| Rat | Or2l5 | 80% | 307 |
| Rat | Or2l5b | 80% | 307 |
| Cow | OR2L3 | 82% | 307 |
| Cow | OR2L3C | 81% | 307 |
| Cow | OR2L2B | 81% | 306 |
| Cow | OR2L2C | 80% | 307 |
| Orang | OR2L1 | 95% | 308 |
| Horse | OR2L5 | 85% | 307 |
| Horse | OR2L5D | 84% | 307 |
| Horse | OR2L5JP | 83% | 307 |
| Chimp | OR2L1 | 98% | 308 |
Expression evidences
| Source | Accession |
|---|---|
| mRNA | X64980 |
Sequence information
| Nucleotide sequence |
ATGGAAAATTACAATCAAACATCAACTGCTTTCATCTTGTTGGGATTGTCGCCACCACCA AAAATTGGCCATTTCATCTTCATTCTCATTAATTTCGTTTTCCTAATGGCTCTAATTGGA AACCTATCCATGATTCTTCTCATCTTCTTGGACATCCATCTCCACACACCCATGTATTTC CTACTTAGTCAGCTCTCCCTCATTGACCTAAATTATATTTCCACCATTGTTCCTAAGATG GTTTATGATTTTTCTGTATGGAAACAAGTCTATCTCCTTCACTGGGTGTGGGATTCAGAG TTTCTTCTTCCTGACTTTAGCAGGTGCAGAAGCGCTGCTCCTGACATCAATGGCCTATGA TCGTTATGTGGCTATTTGCTTTCCTCTCCACTATCCCATCCGTATGAGAAAAAGAGTGTG TGCACTGATGATAACAGGATCTTGGATGATAGGCTCCATCAACTCTTGTGCTCACACGGT ATATGCACTCCGTATCCCATATTGCAAGTCCAGAGCCATCAATCATTTTTTCTGTGATGT TCCAGCTATGTTGACCCTAGCCTGCACGGATACCTGGGTCTATGAGTGCACGGTGTTTTT GAGCACCACCATTTTTCTTGTGTTTCCCTTCATTTGTATTGCATGTTCCTATGGCCGGAT TCTCCTTGCTGTCTACCACATGCACTCTGCAGAAGGGAGGAAGAAGGCCTATTCGACCTG CAGCACCCACCTCACTGTAGTGACTTTCTACTATGCACCCTTTGCTTATACCTATCTACG CCCAAGATCCCTGCGATCTCCGACAGAGGACAAGGTTCTGGCTGTCTTCTACACCATCCT CACTCCAATGCTCAACCCCATCATCTACAGCCTGAGAAACAAGGAGGTGATGGGGGCCCT GACACGAGTGATTCAGAAAATCTTT |
| Conceptual translation |
MENYNQTSTAFILLGLSPPPKIGHFIFILINFVFLMALIGNLSMILLIFLDIHLHTPMYF LLSQLSLIDLNYISTIVPKMVYDF\YGNKSISFTGCGIQSFFFLTLAGAEALLLTSMAY DRYVAICFPLHYPIRMRKRVCALMITGSWMIGSINSCAHTVYALRIPYCKSRAINHFFCD VPAMLTLACTDTWVYECTVFLSTTIFLVFPFICIACSYGRILLAVYHMHSAEGRKKAYST CSTHLTVVTFYYAPFAYTYLRPRSLRSPTEDKVLAVFYTILTPMLNPIIYSLRNKEVMGA LTRVIQKIF Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 1 | 248,153,665 | 248,153,665 | SNP | A/G | rs74155865 (DbSNP) | |
| 1 | 248,153,613 | 248,153,613 | SNP | A/T | rs72475092 (DbSNP) | |
| 1 | 248,153,578 | 248,153,578 | SNP | A/T | rs72475091 (DbSNP) | |
| 1 | 248,154,224 | 248,154,224 | SNP | C/T | rs4925586 (DbSNP) | |
| 1 | 248,154,347 | 248,154,347 | SNP | C/T | rs72763231 (DbSNP) | |
| 1 | 247,990,276 | 247,990,276 | SNP | T/A | 1000GP (CEU, CHBJPT) | |
| 1 | 247,990,311 | 247,990,311 | SNP | A/T | 1000GP (CEU, CHBJPT) | |
| 1 | 247,990,922 | 247,990,922 | SNP | C/T | 1000GP (CEU) | |
| 1 | 247,991,191 | 247,991,191 | SNP | / | 1000GP (CHBJPT) | |
| 1 | 100 | -100 | SNP | T/A | 1000GP (YRI, YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 1 | 247,753,334 | 248,322,316 | CopyNumber | Variation_2358 (DGV) |
| 1 | 247,714,585 | 248,277,146 | CopyNumber | Variation_3339 (DGV) |
| 1 | 247,074,430 | 248,328,835 | CopyNumber | Variation_6816 (DGV) |
| 1 | 247,753,207 | 248,376,070 | CopyNumber | Variation_8353 (DGV) |
| 1 | 248,060,959 | 249,167,690 | CopyNumber | Variation_8354 (DGV) |
| 1 | 247,849,473 | 248,277,638 | CopyNumber | Variation_48302 (DGV) |
| 1 | 247,849,473 | 248,285,441 | CopyNumber | Variation_48303 (DGV) |
| 1 | 248,145,644 | 248,277,638 | CopyNumber | Variation_48304 (DGV) |
| 1 | 248,153,469 | 248,156,493 | Deletion | #186 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR2L1P.aApr07-unspliced | main_exon | CDS_partial | chr1 | 247,990,639 | 247,990,981 | + |