OR2R1P Olfactory Receptor
| Gene Symbol | OR2R1P1 (View this gene in GeneCards) |
| Family | 2 |
| Subfamily | R |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR7-4, OST058, HsOR7.6.4P, ORL3186 |
| External Ids | HGNC: 8274 GeneBank: AB065481, AF399457, BK004608, NG_004373 ORDB: ORL3186 |
| Build #39 labels | OR2R1P |
| Chromosomal location | 7:143,488,465-143,489,411 (-) |
| Cluster | 7@143b |
| Synteny | CLIC#16 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR2F1 | 57.88% | 311 |
| OR2F2 | 57.14% | 308 |
| OR2Q1P | 56.77% | 303 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR2R1 | 82% | 310 |
| Mouse | Or2r3 | 80% | 313 |
| Rat | Or2r3 | 81% | 313 |
| Rat | Or2r11 | 80% | 312 |
| Cow | OR2R3 | 79% | 313 |
| Orang | OR2F1E | 59% | 311 |
| Horse | OR2R5 | 80% | 310 |
| Chimp | OR2F1D | 59% | 311 |
Sequence information
| Nucleotide sequence |
ATGTCCCAACTGGGAAGGGACAACATAACCTGGGTGAGTGAGTTCATCCTAATGGGTCTC TCCAGTGACAGGCAGACCCAGGCTGGACTCTTTATCTTATTTGGGGCTGCCTACCTGCTG ACCCTGCTGGGCAATGGGCTCATCCTGCTCCTGATCTGGCTGGACGTGAGACTCCACCTG CCCATGTATTTCTTCCTCTGCAACCTCTCACTTGTGGACATCTGCTACACCTCCAGCAGG GTCCCTCAGATGCTGGTGCACTGCACCAGCAAAGAAAGACCATCTCCTTTGCCCGATGTG GGACCCAGCTCTTTTTCTCCCTGGCCCTCGGAGGGACCGAGTTTTTGTTGCTGGCCGCAA TGGCCTATGACCGCTACGTGGCTGTTTGCGACCCCCTGTGTTACATAGCAGTGATGAGCC CAAGGCTCTGCATGGCACTGGCAGCTGTCTCTTGGCTAGTGGGCCTGGCTAATTCTGCTA TGGAGACGGCACTGACCATGCACCTGCCCACCTGTGGGCACAACGTGCTGAACCATGTGG CCTGTGAGACACTGGCACTGGTCAGGTCGGCCTGCGTGGACATCACCTTCAATCAGGTGG TCATAGTGGCCTCCAGTGTGGTGGTGCTGCTGGTGCCCTGCTGCCTGGTCTCGCTGTCCT ACACCCTCATTGTAGTTGCCGTCCTGCAGATCCACTCCACCCAGGGGCACCGCAAGGCCT TTGGGACCTGTGCCTCCCACCTCACTGTGGTCTCCATATCCTATGGGATGGCCCTCTTTA CCTACATGCAGCCTCGCTCCATGGCCTCAGCTGAGCAGGAAAAGGTGATGGTACTCTCTT ATGCTGTGGTGACCCCCATGTTGAATCCTTTCATCTACAGTCTGCGGAACAAGGATGTGA AGGCAGCTCTGAGTCGAGCTCTGATGAGGAGCTCTGAATTAAAACAT |
| Conceptual translation |
MSQLGRDNITWVSEFILMGLSSDRQTQAGLFILFGAAYLLTLLGNGLILLLIWLDVRLHL PMYFFLCNLSLVDICYTSSRVPQMLVHCTS/RKTISFARCGTQLFFSLALGGTEFLLLA AMAYDRYVAVCDPLCYIAVMSPRLCMALAAVSWLVGLANSAMETALTMHLPTCGHNVLNH VACETLALVRSACVDITFNQVVIVASSVVVLLVPCCLVSLSYTLIVVAVLQIHSTQGHRK AFGTCASHLTVVSISYGMALFTYMQPRSMASAEQEKVMVLSYAVVTPMLNPFIYSLRNKD VKAALSRALMRSSELKH Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 7 | 100 | -100 | SNP | G/A | 1000GP (YRI) | |
| 7 | 143,186,167 | 143,186,167 | SNP | A/G | rs73154242 (DbSNP) | |
| 7 | 143,186,288 | 143,186,288 | SNP | C/T | rs10808027 (DbSNP) | |
| 7 | 143,489,074 | 143,489,074 | SNP | G/A | 1000GP (CEU) | |
| 7 | 143,489,195 | 143,489,195 | SNP | C/T | 1000GP (CEU, CHBJPT) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 7 | 143,147,775 | 144,368,638 | CopyNumber | Variation_3708 (DGV) |
| 7 | 143,183,558 | 143,186,604 | CopyNumber | #43 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.