OR2W6P Olfactory Receptor
| Gene Symbol | OR2W6P1 (View this gene in GeneCards) |
| Family | 2 |
| Subfamily | W |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR6-3, HsOR6.2.2P, ORL3146 |
| External Ids | HGNC: 15072 GeneBank: AB065475, BK004697, NG_004260 ORDB: ORL3146 |
| Build #39 labels | OR2W6P, OR2W7P |
| Chromosomal location | 6:27,937,403-27,938,400 (+) |
| Cluster | 6@28a |
| Synteny | CLIC#12 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR2W1 | 64.26% | 305 |
| OR2W3 | 66.56% | 305 |
| OR2W4P | 66.12% | 307 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR2W6 | 91% | 312 |
| Mouse | Or2w6 | 95% | 312 |
| Rat | Or2w6 | 94% | 312 |
| Rat | Or2w6b | 91% | 312 |
| Cow | OR2W6 | 93% | 312 |
| Cow | OR2W6CP | 92% | 308 |
| Orang | OR2W4 | 67% | 307 |
| Horse | OR2W6 | 94% | 311 |
| Chimp | OR2W6 | 98% | 312 |
Expression evidences
| Source | Accession |
|---|---|
| GNF Atlas2 | gnf1h11116_at |
Sequence information
| Nucleotide sequence |
CTATATCTCTGCTATTCACAGGCATTCATCTTTCTCTCAACAGGTAATATGTAGCTGCAG GTGTGGAAAACGATAATACAAGTTCTTTCGAAGGCTTCATCCTGGTGGGCTTCTCTGATC GTCCCCACCTAGAGCTGATCGTCTTTGTGGTTGTCCTCATCTTTTATCTGCTGACTCTTC TTGGCAACATGACCATTGTCTTGCTTTCAGCTCTGGATTCCCGGCTGCACACACCAATGT ATTTCTTTTTGGCAAACCTCTCATTCCTGGACATGTGTTTCACCACAGGTTCCATCCCTC AGATGCTCTACAACCTTTGGGGTCCAGATAAGACCATCAGCTATGTGGGTTGTGCCATCC AGCTGTACTTTGTCCTGGCCCTGGGAGGGGTGGAGTGTGTCCTCCTGGCTGTCATGGCAT ATGACCGCTATGCTGCAGTCTGCAAACCCCTGCACTACACCATCATCATGCACCCACGTC TCTGTGGACAGCTGGCTTCAGTGGCATGGCTGAGTGGCTTTGGCAATTCTCTCATAATGG CACCCCAGACATTGATGCTACCCCGCTGTGGGCACAGACGAGTTGACCACTTTCTCTGTG AGATGCCAGCACTAATTGGTATGGCCTGTGTAGACACCATGATGCTTGAGGCACTGGCTT TTGCCCTGGCAATCTTTATCATCCTGGCACCACTCATCCTCATTCTCATTTCTTATGGTT ACGTTGGAGGAACAGTGCTTAGGATCAAGTCAGCTGCTGGGCGAAAGAAAGCCTTCAACA CTTGCAGCTCGCATCTAATTGTTGTCTCTCTCTTCTATGGTACAATCATATACATGTACC TCCAGCCAGCAAATACTTATTCCCAGGACCAGGGCAAGTTTCTTACCCTTTTCTACACAA TTGTCACTCCCAGTGTTAACCCCCTGATCTATACACTAAGAAACAAAGATGTTAAAGAGG CCATGAAGAAGGTGCTAGGGAAGGGGAGTGCAGAAATA |
| Conceptual translation |
LYLCYSQAFIFL/NRXVAAGVENDNTSSFEGFILVGFSDRPHLELIVFVVVLIFYLLT LLGNMTIVLLSALDSRLHTPMYFFLANLSFLDMCFTTGSIPQMLYNLWGPDKTISYVGCA IQLYFVLALGGVECVLLAVMAYDRYAAVCKPLHYTIIMHPRLCGQLASVAWLSGFGNSLI MAPQTLMLPRCGHRRVDHFLCEMPALIGMACVDTMMLEALAFALAIFIILAPLILILISY GYVGGTVLRIKSAAGRKKAFNTCSSHLIVVSLFYGTIIYMYLQPANTYSQDQGKFLTLFY TIVTPSVNPLIYTLRNKDVKEAMKKVLGKGSAEI Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 6 | 27,905,403 | 27,905,403 | SNP | A/G | rs72848764 (DbSNP) | |
| 6 | 27,905,509 | 27,905,509 | SNP | C/T | rs67040724 (DbSNP) | |
| 6 | 27,937,731 | 27,937,731 | SNP | T/C | 1000GP (CEU) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| CopyNumber | 69 (Hasin) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.