OR4A10P Olfactory Receptor
| Gene Symbol | OR4A10P1 (View this gene in GeneCards) |
| Family | 4 |
| Subfamily | A |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | HsOR11.11.7P, ORL3590 |
| External Ids | HGNC: 15147 GeneBank: NG_004334 ORDB: ORL3590 |
| Build #39 labels | OR4A25P, OR4A10P |
| Chromosomal location | 11:55,431,957-55,432,367 (+) |
| Cluster | 11@56 |
| Synteny | CLIC#26 |
| Remarks | Trancated by LTR repeat |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR4A13P | 84.09% | 132 |
| OR4A1P | 81.82% | 132 |
| OR4A9P | 83.33% | 132 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR4A39 | 78% | 132 |
| Mouse | Or4a39 | 79% | 133 |
| Rat | Or4a77d | 75% | 136 |
| Cow | OR4A2 | 74% | 132 |
| Orang | OR4A47P | 67% | 136 |
| Horse | OR4A135P | 81% | 132 |
| Horse | OR4A148P | 81% | 132 |
| Chimp | OR4A13P | 88% | 132 |
| Chimp | OR4A13 | 86% | 132 |
| Chimp | OR4A40CP | 86% | 131 |
Sequence information
| Nucleotide sequence |
TCAATTGACCACTTTGTCTGTGACATGTACCCATTATTGGAACTGGCGTTCACTGATACC TACTTTATAGGCCTCACTGTTGTTGTCAATGGTGGAGCAATGTGTATGGTCATCTTCACC ATTCTACTAATATCCTACGGAATCATCCTAAACTCTCTTAAAACTTATAGTCAGGAAGGG AGGTGTAAAGCCCTGTCTACCTGCAGCCCCCACATAACCGTGGTTGTCCTCTTTTTTGTT CCCTGTATTTTCATATATGTTAGACCTGTTTCAACCTTTCCTATTGATAAATTCATGACT GTGTTTTATACAGTTATCACACCCATGTTGAATCCTTTAATATACACGTTGAGAAATTCA GAGATGAGAAACTCTATAGAAAATCTCTTGTGTAAAAAAGCTATCTGTAGT |
| Conceptual translation |
SIDHFVCDMYPLLELAFTDTYFIGLTVVVNGGAMCMVIFTILLISYGIILNSLKTYSQEG RCKALSTCSPHITVVVLFFVPCIFIYVRPVSTFPIDKFMTVFYTVITPMLNPLIYTLRNS EMRNSIENLLCKKAICS Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 55,199,639 | 55,199,639 | SNP | C/T | rs35627018 (DbSNP) | |
| 11 | 55,199,460 | 55,199,460 | SNP | T/C | rs72484202 (DbSNP) | |
| 11 | 55,432,064 | 55,432,064 | SNP | G/A | 1000GP (CEU) | |
| 11 | 55,432,163 | 55,432,163 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 11 | 100 | -100 | SNP | A/G | 1000GP (YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 55,153,930 | 55,816,828 | CopyNumber | Variation_0308 (DGV) |
| 11 | 55,183,726 | 55,258,691 | CopyNumber | Variation_6922 (DGV) |
| 11 | 54,835,623 | 55,879,426 | CopyNumber | Variation_8690 (DGV) |
| 11 | 55,121,706 | 55,340,753 | CopyNumber | Variation_9185 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.