OR4A9P Olfactory Receptor

Gene Symbol	OR4A9P¹ (View this gene in GeneCards)
Family	4
Subfamily	A
Pseudogene	Yes
CORP pseudogene probability score
Aliases	OR11-119, HsOR11.11.5P, ORL3589
External Ids	HGNC: 15166 GeneBank: BK004552, NG_004333 ORDB: ORL3589
Build #39 labels	OR4A9P
Chromosomal location	11:55,388,529-55,389,472 (+)
Cluster	11@56
Synteny	CLIC#26
Remarks

Most Similar ORs in Humans (Paralogs)

Symbol	Percent	Length
OR4A13P	78.98%	314
OR4A45P	79.6%	299
OR4A5	81.01%	316

Most Similar ORs in other species (Orthologs)

Specie	Symbol	Percent	Length
Dog	OR4A39	72%	306
Mouse	Or4a39	72%	309
Rat	Or4a77e	68%	309
Cow	OR4A2	65%	303
Orang	OR4A47P	62%	304
Horse	OR4A124	71%	309
Chimp	OR4A13P	83%	303
Chimp	OR4A40CP	80%	302

Sequence information

Nucleotide sequence

ATGAGACCTAATAACAGCATTACAGAATTTGTCCTCCTGGGATTCTCTCAGGATCCTGGT
ATGCAAAAAGAATTATTTGTCATGTTTTTATTCACATACGTTGTGACTGTGTTGGGGAAC
CAGCTCATTGTGGTGACTATCATTGCCAGCCCTTCCTTGGGCTCCCCAATGTACTTCTTC
CTTGCCTGCCTGTCATTTATAGATGCTGCATATTTCACTGTCATTTCTCCCAAATTGATT
GTGGACTTACTCTGTGATAAAAAGACTATTTCCTTCCAAACGTTCATGGGCCAACTATTT
ATAGACCACTTCTTTGGTGGTGCAGAGGCCTTCCTTCTGGTGGTGATGGCCTATGATCGC
TATGTTGCCATCTGTAAGACATTGCACTATTTGACCATCATGACTCGACAGGTTTGTATC
CTTGCATTGCTGGTGGCTGCGACAGGCGGTTTTGTGCATTCTGTGTTTCAAATTGTTGTT
GTGTACAGTCTCCCTTTCTGTGGCGCCAATGTCATTGATCATTTCAGTTGTGACATGTAT
CCATTATTGGAACTGGCATGAACTGACACCTACTTTATAGGCCTCACTGTTGTTTTCAGT
GGTGGAGCACTCTGTATGGTCATCTTCACCCTTCTAATAATTTCCTATAGGGTCATCCTA
AACTCCCTTAAAACTTACACTCAGGAAGGGAGGCATAAAGCCCTGTCTACCTGCAGCTCC
CACATCACTGTGATTGTTCTCTTTTTATTCCCTGTATTTTCATATATGTGAGACCTGTTT
CAAACTTTTCTATTGACACATTCATGACTGTCTTTTATACAGTTATCACACCCAAGTTGA
ATCCTTTAATATACACTTTCAGAAATTCAGAGATGAGAAATGTTATAGAAAAACTCTTGG
TGAAAAAGGTAACTATATTTAGAATAACAGGGTCCATCCTCATG

Conceptual translation

MRPNNSITEFVLLGFSQDPGMQKELFVMFLFTYVVTVLGNQLIVVTIIASPSLGSPMYFF
LACLSFIDAAYFTVISPKLIVDLLCDKKTISFQTFMGQLFIDHFFGGAEAFLLVVMAYDR
YVAICKTLHYLTIMTRQVCILALLVAATGGFVHSVFQIVVVYSLPFCGANVIDHFSCDMY
PLLELAXDTYFIGLTVVFSGGALCMVIFTLLIISYRVILNSLKTYTQEGRHKALSTCSS
HITVIVL/FIPCIFIYVRPVSNFSIDTFMTVFYTVITPKLNPLIYTFRNSEMRNVIEKL
LVKKVTIFRITGSILM

Protein domains and features

Variations - SNPs

Chr	Start	End	Type	Variation	SNP IDs
11	55,154,704	55,154,704	large insertion	55945bp insertion	rs72486104 (DbSNP)
11	55,091,194	55,091,194	large insertion	68235bp insertion	rs72488330 (DbSNP)
11	55,106,764	55,106,764	large insertion	75252bp insertion	rs72493768 (DbSNP)
11	55,156,065	55,156,065	SNP	A/G	rs56131310 (DbSNP)
11	55,156,173	55,156,173	SNP	A/G	rs61916230 (DbSNP)
11	55,156,150	55,156,150	SNP	C/T	rs73482054 (DbSNP)
11	55,156,941	55,156,941	SNP	C/T	rs61916231 (DbSNP)
11	55,156,434	55,156,434	SNP	C/T	rs11229374 (DbSNP)
11	55,156,444	55,156,444	SNP	C/T	rs11229375 (DbSNP)
11	55,156,124	55,156,124	SNP	C/T	rs61916229 (DbSNP)
11	55,388,589	55,388,589	SNP	A/G	1000GP (CEU)
11	55,388,648	55,388,648	SNP	C/T	1000GP (CEU)
11	55,388,958	55,388,958	SNP	C/T	1000GP (CEU, CHBJPT)
11	55,388,968	55,388,968	SNP	C/T	1000GP (CEU, CHBJPT)
11	55,389,380	55,389,380	SNP	T/C	1000GP (CEU)
11	55,389,427	55,389,427	SNP	G/A	1000GP (CEU)
11	55,389,465	55,389,465	SNP	T/C	1000GP (CEU)
11	55,388,798	55,388,798	SNP	T/C	1000GP (CHBJPT)
11	100	-100	SNP	A/G	1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI)

Variations - CNVs

Chr	Start	End	Type	Sources
11	55,153,930	55,816,828	CopyNumber	Variation_0308 (DGV)
11	54,835,623	55,879,426	CopyNumber	Variation_8690 (DGV)
11	55,121,706	55,340,753	CopyNumber	Variation_9185 (DGV)
11	55,083,434	55,156,434	CopyNumber	Variation_48825 (DGV)

Haplotypes

Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.

HORDE

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