OR4A13P Olfactory Receptor
| Gene Symbol | OR4A13P1 (View this gene in GeneCards) |
| Family | 4 |
| Subfamily | A |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR11-126, OR11-120, OR11-122, OR11-123, HsOR11.11.9P, ORL3593 |
| External Ids | HGNC: 15150 GeneBank: AB065596, AF546434-AF546447, AY283973-AY284004, BK004631, BK004650, BK004680, BK004801, NG_004242 ORDB: ORL3593 |
| Build #39 labels | OR4A13P |
| Chromosomal location | 11:55,466,771-55,467,712 (+) |
| Cluster | 11@56 |
| Synteny | CLIC#26 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR4A11P | 82.78% | 302 |
| OR4A1P | 79.8% | 307 |
| OR4A40P | 82.67% | 300 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR4A39 | 76% | 308 |
| Mouse | Or4a39 | 74% | 311 |
| Rat | Or4a77e | 72% | 311 |
| Cow | OR4A2 | 69% | 303 |
| Orang | OR4A47P | 66% | 304 |
| Horse | OR4A124 | 75% | 311 |
| Chimp | OR4A13 | 95% | 314 |
Expression evidences
| Source | Accession |
|---|---|
| mRNA | AB529256 |
Sequence information
| Nucleotide sequence |
ATGAGACCTAATAACAGTATTACAGAATTTGTCCTCCTGGGCTTTTCACAGGATCCTGAT ATGCAAAACACATTATTTGTCATGTTTTTACTCACATACATTGTGACAGTGGTGGGGAAC CTACTCGTTGCGGTGACTATTATTGTCAGCCCTTCCTTGAGCTCCCCAATGTAATTCTTC CTTGCTTGCCTGTCATTAATAGATGCTGTATTATCCACCACCATTTCTCCCATATTGATT GTAGACCTACTCTGTGACAAAAAGACTATTTCCTTCCCAGCTTGCATGGGCCAGCTATTT ACAGACCACTTGTTTGGTGGAACTGAGATCTTCCTTCTGGTGGTGATGGCCTATGATCGC TACGTGGCCATCTGTAAGCCACTGCACTATTTAACCATCATGAATCGACAGGTTTCCATC CTTCTGTTGGTGGTGGCCATGACTGGAGGTTTCCTTCATTCTGTGTTTCAAATTGCTGTT CTGTACAGTCTCCCTTTCTGTGGCCCCAATGTCATTGACCACTTTTTCTGTGACATGTAC CCATTATTGGAACTGGCGTGCACTGACACCTACTCTATAGGCCTCACTGTAGTTTTCAGT GGTGGAGCAATGTGTATGGTCATCTTCGCCCTTCTACTAATCTCCTATGGAGTCAGCCTA AACTCCCTTAAAACTTATAGTCAGGAAGGGAGGCGTAAAGCCCTGTCTACCTGCAGCTCG CACATCACCGTGGTTGTCCTCTTTTTTGTTCCCTGTATTTTCATGTATGTTAGACCTGTC TCAAACTTCCCTATTGATAAATTCGTTACTGTGTTTTATACATTTATCACACCCATGCTG AATCCTTTTTTATACACGTTGAGAAATTCAGAGATGATAAATGCTATAAAACACCTGTTG TGTAAGAAGCTAACTATAGTTAGAATAAGAGTGTCCCTCCTC |
| Conceptual translation |
MRPNNSITEFVLLGFSQDPDMQNTLFVMFLLTYIVTVVGNLLVAVTIIVSPSLSSPMXF LACLSLIDAVLSTTISPILIVDLLCDKKTISFPACMGQLFTDHLFGGTEIFLLVVMAYDR YVAICKPLHYLTIMNRQVSILLLVVAMTGGFLHSVFQIAVLYSLPFCGPNVIDHFFCDMY PLLELACTDTYSIGLTVVFSGGAMCMVIFALLLISYGVSLNSLKTYSQEGRRKALSTCSS HITVVVLFFVPCIFMYVRPVSNFPIDKFVTVFYTFITPMLNPFLYTLRNSEMINAIKHLL CKKLTIVRIRVSLL Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 55,234,707 | 55,234,706 | Ins(1) | -/A | rs35316755 (DbSNP) | |
| 11 | 55,234,832 | 55,234,832 | SNP | A/G | rs61917962 (DbSNP) | |
| 11 | 55,234,605 | 55,234,605 | SNP | A/G | rs2017467 (DbSNP) | |
| 11 | 55,234,406 | 55,234,406 | SNP | A/G | rs61916458 (DbSNP) | |
| 11 | 55,234,415 | 55,234,415 | SNP | A/G | rs11229834 (DbSNP) | |
| 11 | 55,234,263 | 55,234,263 | SNP | A/G | rs558600 (DbSNP) | |
| 11 | 55,234,722 | 55,234,722 | SNP | C/T | rs61916459 (DbSNP) | |
| 11 | 55,234,828 | 55,234,828 | SNP | C/T | rs59710012 (DbSNP) | |
| 11 | 55,234,821 | 55,234,821 | SNP | C/T | rs61917961 (DbSNP) | |
| 11 | 55,234,738 | 55,234,738 | SNP | C/T | rs61917960 (DbSNP) | |
| 11 | 55,234,680 | 55,234,680 | SNP | G/T | rs1968300 (DbSNP) | |
| 11 | 55,235,069 | 55,235,069 | SNP | G/T | rs670525 (DbSNP) | |
| 11 | 55,466,787 | 55,466,787 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 11 | 55,466,930 | 55,466,930 | SNP | A/G | 1000GP (CEU) | |
| 11 | 55,467,129 | 55,467,129 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 11 | 55,467,246 | 55,467,246 | SNP | C/T | 1000GP (CEU) | |
| 11 | 55,467,262 | 55,467,262 | SNP | C/T | 1000GP (CEU) | |
| 11 | 55,467,309 | 55,467,309 | SNP | A/T | 1000GP (CEU) | |
| 11 | 55,467,345 | 55,467,345 | SNP | C/T | 1000GP (CEU) | |
| 11 | 55,467,356 | 55,467,356 | SNP | A/G | 1000GP (CEU) | |
| 11 | 55,467,593 | 55,467,593 | SNP | T/G | 1000GP (CHBJPT) | |
| 11 | 100 | -100 | SNP | G/A | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 55,153,930 | 55,816,828 | CopyNumber | Variation_0308 (DGV) |
| 11 | 55,222,420 | 55,621,884 | CopyNumber | Variation_3852 (DGV) |
| 11 | 55,183,726 | 55,258,691 | CopyNumber | Variation_6922 (DGV) |
| 11 | 54,835,623 | 55,879,426 | CopyNumber | Variation_8690 (DGV) |
| 11 | 55,121,706 | 55,340,753 | CopyNumber | Variation_9185 (DGV) |
| CopyNumber | 97 (Hasin) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.