OR4A40P Olfactory Receptor
| Gene Symbol | OR4A40P1 (View this gene in GeneCards) |
| Family | 4 |
| Subfamily | A |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | HsOR11.8.16P |
| External Ids | HGNC: 31259 GeneBank: NG_004327 |
| Build #39 labels | |
| Chromosomal location | 11:48,512,320-48,513,263 (+) |
| Cluster | 11@48 |
| Synteny | CLIC#26 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR4A11P | 85.33% | 300 |
| OR4A13P | 82.67% | 300 |
| OR4A8P | 87.94% | 315 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR4A39 | 73% | 312 |
| Mouse | Or4a39 | 76% | 299 |
| Rat | Or4a77e | 73% | 299 |
| Cow | OR4A2 | 68% | 305 |
| Orang | OR4A47P | 65% | 299 |
| Horse | OR4A124 | 76% | 299 |
| Chimp | OR4A40 | 89% | 315 |
| Chimp | OR4A8P | 91% | 300 |
Sequence information
| Nucleotide sequence |
ATGAGACAGAATAACAATATTACAGAAATTGTCCTCCTGGGCTTCTCCAGGATCCTGATG TGCAAAATGCATTATTTGTCATGTTTTTACTCATATACATTGTGACTATGGTGGGGAACC TGCTCATTGTGGTGACTATTATTGCCAGTCCCTCTTTGGGCTCCCCAATGTACTTCTTCC TTGCCTGCCCGTCATTTATAGATGCTGTGTATTCCACCACCATTCCTCCCTTATTGATTG TATACTTACTCTGTGATAAAAAGACTATTTCCTTCCCAGCTTGCATGGGTCAGCTATTTA TAGACCACTTGTTAGGTGGTACTGACGTCTTCCTTCTGGTGGTGATGGCCTATGATTGCC ACATGGCCATCTGTAAGCCACTGCACTATTTGACCATCATGAATTGACAGGTTTACATCC TTCTGTTGGTGGTGGCTGTGACTGGAGGTTTTCTGTATTCTGTGTTTCAAATTTTAGTTG TGTACAGTCTCCCTTTCTGTGGCCCCAATGTCATTGACCACTTTTTCTGTGACTTATACC CTTTATTGGAACTGGGGTGCATTGACACCTACTTTATAGGCCTTGCTGTTGTTTTCAATG GTGGAGCAATCTGTATGGTCATCTTCACCCTTCTACTAATCTCCTATGGGGTCATCCTAA ACTCCCTTAAAACTTATAGTCAGGAAGGGAGGCATAAAGCTCTGTCTACCTGCAGCTCCC ACATTGCCATGGTTATCTTGTTTTTTGTTCCCTGTATTTTCATATATGTTAGACCCGTTT CAAACTTTCCTATTGATAAATTCCTGACTGTGTTTTATTCAGTTATCACACCCATGTTGA ATCCTTTTATATACACGTTGAGAAATTCAGAGATGAGAAATGCTATAGAAAAACTCTTGT GATACCAAAGTAGGAAGACAGGATTTAGATGCTCCAAGCTCAAT |
| Conceptual translation |
MRQNNNITEIVLLGF/QDPDVQNALFVMFLLIYIVTMVGNLLIVVTIIASPSLGSPMYF FLACPSFIDAVYSTTIPPLLIVYLLCDKKTISFPACMGQLFIDHLLGGTDVFLLVVMAYD CHMAICKPLHYLTIMNXVYILLLVVAVTGGFLYSVFQILVVYSLPFCGPNVIDHFFCDL YPLLELGCIDTYFIGLAVVFNGGAICMVIFTLLLISYGVILNSLKTYSQEGRHKALSTCS SHIAMVILFFVPCIFIYVRPVSNFPIDKFLTVFYSVITPMLNPFIYTLRNSEMRNAIEKL LXQSRKTGFRCSKLN Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 100 | -100 | SNP | T/G | 1000GP (YRI, YRI, YRI) | |
| 11 | 48,512,361 | 48,512,361 | SNP | C/T | 1000GP (CEU) | |
| 11 | 48,512,550 | 48,512,550 | SNP | T/G | 1000GP (CEU, CHBJPT) | |
| 11 | 48,512,775 | 48,512,775 | SNP | T/C | 1000GP (CHBJPT) | |
| 11 | 48,513,219 | 48,513,219 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 11 | 48,534,102 | 48,534,102 | SNP | G/T | rs4882096 (DbSNP) | |
| 11 | 48,534,119 | 48,534,119 | SNP | A/T | rs72902632 (DbSNP) | |
| 11 | 48,534,160 | 48,534,160 | SNP | A/G | rs73466754 (DbSNP) | |
| 11 | 48,534,174 | 48,534,174 | SNP | C/G | rs12361373 (DbSNP) | |
| 11 | 48,534,327 | 48,534,327 | SNP | C/T | rs10732504 (DbSNP) | |
| 11 | 48,534,771 | 48,534,771 | SNP | C/T | rs10742851 (DbSNP) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 48,303,671 | 48,863,606 | CopyNumber | Variation_3848 (DGV) |
| 11 | 48,346,202 | 48,972,502 | CopyNumber | Variation_9183 (DGV) |
| 11 | 48,365,757 | 49,068,634 | CopyNumber | Variation_2922 (DGV) |
| 11 | 48,479,497 | 48,689,328 | CopyNumber | Variation_5013 (DGV) |
| 11 | 48,533,772 | 48,536,815 | Deletion | #208 (Waszak) |
| 11 | 48,534,771 | 48,592,092 | CopyNumber | Variation_9184 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.