OR4A17P Olfactory Receptor

Gene Symbol	OR4A17P¹ (View this gene in GeneCards)
Family	4
Subfamily	A
Pseudogene	Yes
CORP pseudogene probability score
Aliases	HsOR11.11.8P, ORL3630
External Ids	HGNC: 15154 GeneBank: NG_004335 ORDB: ORL3630
Build #39 labels	OR4A17P, OR4A22P
Chromosomal location	11:55,444,435-55,445,338 (+)
Cluster	11@56
Synteny	CLIC#26
Remarks

Most Similar ORs in Humans (Paralogs)

Symbol	Percent	Length
OR4A11P	76.82%	302
OR4A1P	77.15%	302
OR4A45P	74.67%	300

Most Similar ORs in other species (Orthologs)

Specie	Symbol	Percent	Length
Dog	OR4A39	74%	300
Mouse	Or4a39	74%	303
Rat	Or4a81	71%	303
Cow	OR4A2	67%	303
Orang	OR4A47P	62%	303
Horse	OR4A148P	74%	303
Chimp	OR4A13P	79%	303

Sequence information

Nucleotide sequence

ATGGGAACAAGTAATAATGTTACAGAATTTGTCCTCCCAGGCCTCTCTCAGGATCCTGAT
GTGCAAAAAGCATTATTTGTAATGTTTTTACTCACATACAATGTGACTATGGTGGGCAAC
CTTCTCATTGTGGTGACCATTATTGCCATCGCCTCCTTGGACTCCCCAGTGTCCTTCTTC
CTCGCATGCCTGTCATTTATTGATGCTGTATATTCCACTTCCTTTTCCCCTAAGTTGATG
ATAGACTTACTCTGTGATAAAAAAGACTGTTTCTTTCCTGGCTTGCATGGGCCAGCTATT
TATAAACTACCCATTTGGTGGTATTGAGGTCTTTCTTTTGGTGGGTATGGCCTGTGATCA
CTATGTGGACATCTGTAAGCTACTGCACTATTTGACCATCATGAACTGGCAGGTTTGCAT
CCTCCTGTTTATGGTGGCTGTGACTGGAGGTTTTTGCATTCTATGTTTCAAATTGTTGTT
GTGTACAGTCTCCCTTTCTGTGGCCCCAATGTCATTGACCATTTTGTGACATGTACCCAT
TATTGGAAATGGTGTGCACTGACACTTACTTTATAGGCCTCACTGTGATTGCCAATGGTG
GAGCAGTCTGTATGGTCATCTTCATCCTTCTACTAATCTCCTATGGAGTCATCCTAAACT
CCCTTAAAACTTATAGTCAGGAAGGCGGGCATAAAGCCCTGTCTACCTGCAGCTCCAACA
TTACTGTTGTGTCCCCTTTTTTGATCCCTGTATTTTCATCTATGTTAGACCTGATTCAAA
CTTTCCTATTGATAAATTCATGACTGTGTTTTATACAATTATCACATCCATGTTGAATCC
ATTAATATACACACTGAGAAATTTAGAGGTGAGAATTGCTGTGAAAAAACTCTGGTGTAA
AAAC

Conceptual translation

MGTSNNVTEFVLPGLSQDPDVQKALFVMFLLTYNVTMVGNLLIVVTIIAIASLDSPVSFF
LACLSFIDAVYSTSFSPKLMIDLLCDKK\VSFLACMGQLFINYPFGGIEVFLLVGMACD
HYVDICKLLHYLTIMNWQVCILLFMVAVTG/FLHSMFQIVVVYSLPFCGPNVID/FCD
MYPLLEMVCTDTYFIGLTVIANGGAVCMVIFILLLISYGVILNSLKTYSQEGGHKALSTC
SSNITVVS/FFDPCIFIYVRPDSNFPIDKFMTVFYTIITSMLNPLIYTLRNLEVRIAVK
KLWCKN

Protein domains and features

Variations - SNPs

Chr	Start	End	Type	Variation	SNP IDs
11	55,212,096	55,212,096	SNP	A/C	rs4488212 (DbSNP)
11	55,212,709	55,212,709	SNP	A/C	rs12803747 (DbSNP)
11	55,212,398	55,212,398	SNP	A/G	rs61916394 (DbSNP)
11	55,212,507	55,212,507	SNP	A/G	rs72486191 (DbSNP)
11	55,212,505	55,212,505	SNP	A/G	rs61916395 (DbSNP)
11	55,212,347	55,212,347	SNP	A/G	rs73465506 (DbSNP)
11	55,212,611	55,212,611	SNP	A/G	rs61916396 (DbSNP)
11	55,212,799	55,212,799	SNP	A/T	rs2845646 (DbSNP)
11	55,212,234	55,212,234	SNP	A/T	rs11229691 (DbSNP)
11	55,212,249	55,212,249	SNP	C/T	rs72922600 (DbSNP)
11	55,211,925	55,211,925	SNP	C/T	rs61916376 (DbSNP)
11	55,212,205	55,212,205	SNP	G/T	rs4545579 (DbSNP)
11	55,212,737	55,212,737	SNP	T/C	rs2553188 (DbSNP)
11	55,212,188	55,212,188	SNP	T/C	rs2553190 (DbSNP)
11	55,212,093	55,212,093	SNP	T/C	rs3949112 (DbSNP)
11	55,212,033	55,212,033	SNP	T/G	rs2186595 (DbSNP)
11	55,444,449	55,444,449	SNP	T/C	1000GP (CEU)
11	55,444,557	55,444,557	SNP	T/G	1000GP (CEU)
11	55,444,617	55,444,617	SNP	C/T	1000GP (CEU)
11	55,444,620	55,444,620	SNP	A/C	1000GP (CEU)
11	55,444,758	55,444,758	SNP	T/A	1000GP (CEU, CHBJPT)
11	55,444,773	55,444,773	SNP	T/C	1000GP (CEU)
11	55,445,029	55,445,029	SNP	A/G	1000GP (CEU)
11	55,445,135	55,445,135	SNP	G/A	1000GP (CEU)
11	55,445,233	55,445,233	SNP	C/A	1000GP (CEU, CHBJPT)
11	55,445,261	55,445,261	SNP	T/C	1000GP (CEU)
11	55,445,323	55,445,323	SNP	A/T	1000GP (CEU, CHBJPT)
11	55,445,031	55,445,031	SNP	G/A	1000GP (CHBJPT)
11	100	-100	SNP	C/T	1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI)

Variations - CNVs

Chr	Start	End	Type	Sources
11	55,153,930	55,816,828	CopyNumber	Variation_0308 (DGV)
11	55,183,726	55,258,691	CopyNumber	Variation_6922 (DGV)
11	54,835,623	55,879,426	CopyNumber	Variation_8690 (DGV)
11	55,121,706	55,340,753	CopyNumber	Variation_9185 (DGV)

Haplotypes

Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.

HORDE

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