Search Olfactory receptors

(e.g. OR1G1, AF087928, Segregating Pseudo)

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Chromosome:

OR4A17P Olfactory Receptor

Gene Symbol OR4A17P1 (View this gene in GeneCards)
Family 4
Subfamily A
Pseudogene Yes
CORP pseudogene probability score
Aliases HsOR11.11.8P, ORL3630
External Ids HGNC: 15154   GeneBank: NG_004335   ORDB: ORL3630   
Build #39 labels OR4A17P, OR4A22P
Chromosomal location 11:55,444,435-55,445,338 (+)
Cluster 11@56
Synteny CLIC#26
Remarks

Most Similar ORs in Humans (Paralogs)

Symbol Percent Length
OR4A11P 76.82% 302
OR4A1P 77.15% 302
OR4A45P 74.67% 300

Most Similar ORs in other species (Orthologs)

Specie Symbol Percent Length
Dog OR4A39 74% 300
Mouse Or4a39 74% 303
Rat Or4a81 71% 303
Cow OR4A2 67% 303
Orang OR4A47P 62% 303
Horse OR4A148P 74% 303
Chimp OR4A13P 79% 303

Sequence information

Nucleotide sequence ATGGGAACAAGTAATAATGTTACAGAATTTGTCCTCCCAGGCCTCTCTCAGGATCCTGAT
GTGCAAAAAGCATTATTTGTAATGTTTTTACTCACATACAATGTGACTATGGTGGGCAAC
CTTCTCATTGTGGTGACCATTATTGCCATCGCCTCCTTGGACTCCCCAGTGTCCTTCTTC
CTCGCATGCCTGTCATTTATTGATGCTGTATATTCCACTTCCTTTTCCCCTAAGTTGATG
ATAGACTTACTCTGTGATAAAAAAGACTGTTTCTTTCCTGGCTTGCATGGGCCAGCTATT
TATAAACTACCCATTTGGTGGTATTGAGGTCTTTCTTTTGGTGGGTATGGCCTGTGATCA
CTATGTGGACATCTGTAAGCTACTGCACTATTTGACCATCATGAACTGGCAGGTTTGCAT
CCTCCTGTTTATGGTGGCTGTGACTGGAGGTTTTTGCATTCTATGTTTCAAATTGTTGTT
GTGTACAGTCTCCCTTTCTGTGGCCCCAATGTCATTGACCATTTTGTGACATGTACCCAT
TATTGGAAATGGTGTGCACTGACACTTACTTTATAGGCCTCACTGTGATTGCCAATGGTG
GAGCAGTCTGTATGGTCATCTTCATCCTTCTACTAATCTCCTATGGAGTCATCCTAAACT
CCCTTAAAACTTATAGTCAGGAAGGCGGGCATAAAGCCCTGTCTACCTGCAGCTCCAACA
TTACTGTTGTGTCCCCTTTTTTGATCCCTGTATTTTCATCTATGTTAGACCTGATTCAAA
CTTTCCTATTGATAAATTCATGACTGTGTTTTATACAATTATCACATCCATGTTGAATCC
ATTAATATACACACTGAGAAATTTAGAGGTGAGAATTGCTGTGAAAAAACTCTGGTGTAA
AAAC
Conceptual translation MGTSNNVTEFVLPGLSQDPDVQKALFVMFLLTYNVTMVGNLLIVVTIIAIASLDSPVSFF
LACLSFIDAVYSTSFSPKLMIDLLCDKK\VSFLACMGQLFINYPFGGIEVFLLVGMACD
HYVDICKLLHYLTIMNWQVCILLFMVAVTG/FLHSMFQIVVVYSLPFCGPNVID/FCD
MYPLLEMVCTDTYFIGLTVIANGGAVCMVIFILLLISYGVILNSLKTYSQEGGHKALSTC
SSNITVVS/FFDPCIFIYVRPDSNFPIDKFMTVFYTIITSMLNPLIYTLRNLEVRIAVK
KLWCKN

Protein domains and features

Variations - SNPs

Chr Start End Type Variation AA Change SNP IDs
11 55,212,096 55,212,096 SNP A/C rs4488212 (DbSNP)
11 55,212,709 55,212,709 SNP A/C rs12803747 (DbSNP)
11 55,212,398 55,212,398 SNP A/G rs61916394 (DbSNP)
11 55,212,507 55,212,507 SNP A/G rs72486191 (DbSNP)
11 55,212,505 55,212,505 SNP A/G rs61916395 (DbSNP)
11 55,212,347 55,212,347 SNP A/G rs73465506 (DbSNP)
11 55,212,611 55,212,611 SNP A/G rs61916396 (DbSNP)
11 55,212,799 55,212,799 SNP A/T rs2845646 (DbSNP)
11 55,212,234 55,212,234 SNP A/T rs11229691 (DbSNP)
11 55,212,249 55,212,249 SNP C/T rs72922600 (DbSNP)
11 55,211,925 55,211,925 SNP C/T rs61916376 (DbSNP)
11 55,212,205 55,212,205 SNP G/T rs4545579 (DbSNP)
11 55,212,737 55,212,737 SNP T/C rs2553188 (DbSNP)
11 55,212,188 55,212,188 SNP T/C rs2553190 (DbSNP)
11 55,212,093 55,212,093 SNP T/C rs3949112 (DbSNP)
11 55,212,033 55,212,033 SNP T/G rs2186595 (DbSNP)
11 55,444,449 55,444,449 SNP T/C 1000GP (CEU)
11 55,444,557 55,444,557 SNP T/G 1000GP (CEU)
11 55,444,617 55,444,617 SNP C/T 1000GP (CEU)
11 55,444,620 55,444,620 SNP A/C 1000GP (CEU)
11 55,444,758 55,444,758 SNP T/A 1000GP (CEU, CHBJPT)
11 55,444,773 55,444,773 SNP T/C 1000GP (CEU)
11 55,445,029 55,445,029 SNP A/G 1000GP (CEU)
11 55,445,135 55,445,135 SNP G/A 1000GP (CEU)
11 55,445,233 55,445,233 SNP C/A 1000GP (CEU, CHBJPT)
11 55,445,261 55,445,261 SNP T/C 1000GP (CEU)
11 55,445,323 55,445,323 SNP A/T 1000GP (CEU, CHBJPT)
11 55,445,031 55,445,031 SNP G/A 1000GP (CHBJPT)
11 100 -100 SNP C/T 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI)

Variations - CNVs

Chr Start End Type Sources
11 55,153,930 55,816,828 CopyNumber Variation_0308 (DGV)
11 55,183,726 55,258,691 CopyNumber Variation_6922 (DGV)
11 54,835,623 55,879,426 CopyNumber Variation_8690 (DGV)
11 55,121,706 55,340,753 CopyNumber Variation_9185 (DGV)

Haplotypes

Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.