OR4A17P Olfactory Receptor
Gene Symbol | OR4A17P1 (View this gene in GeneCards) |
Family | 4 |
Subfamily | A |
Pseudogene | Yes |
CORP pseudogene probability score | |
Aliases | HsOR11.11.8P, ORL3630 |
External Ids | HGNC: 15154 GeneBank: NG_004335 ORDB: ORL3630 |
Build #39 labels | OR4A17P, OR4A22P |
Chromosomal location | 11:55,444,435-55,445,338 (+) |
Cluster | 11@56 |
Synteny | CLIC#26 |
Remarks |
Most Similar ORs in Humans (Paralogs)
Symbol | Percent | Length |
---|---|---|
OR4A11P | 76.82% | 302 |
OR4A1P | 77.15% | 302 |
OR4A45P | 74.67% | 300 |
Most Similar ORs in other species (Orthologs)
Specie | Symbol | Percent | Length |
---|---|---|---|
Dog | OR4A39 | 74% | 300 |
Mouse | Or4a39 | 74% | 303 |
Rat | Or4a81 | 71% | 303 |
Cow | OR4A2 | 67% | 303 |
Orang | OR4A47P | 62% | 303 |
Horse | OR4A148P | 74% | 303 |
Chimp | OR4A13P | 79% | 303 |
Sequence information
Nucleotide sequence |
ATGGGAACAAGTAATAATGTTACAGAATTTGTCCTCCCAGGCCTCTCTCAGGATCCTGAT GTGCAAAAAGCATTATTTGTAATGTTTTTACTCACATACAATGTGACTATGGTGGGCAAC CTTCTCATTGTGGTGACCATTATTGCCATCGCCTCCTTGGACTCCCCAGTGTCCTTCTTC CTCGCATGCCTGTCATTTATTGATGCTGTATATTCCACTTCCTTTTCCCCTAAGTTGATG ATAGACTTACTCTGTGATAAAAAAGACTGTTTCTTTCCTGGCTTGCATGGGCCAGCTATT TATAAACTACCCATTTGGTGGTATTGAGGTCTTTCTTTTGGTGGGTATGGCCTGTGATCA CTATGTGGACATCTGTAAGCTACTGCACTATTTGACCATCATGAACTGGCAGGTTTGCAT CCTCCTGTTTATGGTGGCTGTGACTGGAGGTTTTTGCATTCTATGTTTCAAATTGTTGTT GTGTACAGTCTCCCTTTCTGTGGCCCCAATGTCATTGACCATTTTGTGACATGTACCCAT TATTGGAAATGGTGTGCACTGACACTTACTTTATAGGCCTCACTGTGATTGCCAATGGTG GAGCAGTCTGTATGGTCATCTTCATCCTTCTACTAATCTCCTATGGAGTCATCCTAAACT CCCTTAAAACTTATAGTCAGGAAGGCGGGCATAAAGCCCTGTCTACCTGCAGCTCCAACA TTACTGTTGTGTCCCCTTTTTTGATCCCTGTATTTTCATCTATGTTAGACCTGATTCAAA CTTTCCTATTGATAAATTCATGACTGTGTTTTATACAATTATCACATCCATGTTGAATCC ATTAATATACACACTGAGAAATTTAGAGGTGAGAATTGCTGTGAAAAAACTCTGGTGTAA AAAC |
Conceptual translation |
MGTSNNVTEFVLPGLSQDPDVQKALFVMFLLTYNVTMVGNLLIVVTIIAIASLDSPVSFF LACLSFIDAVYSTSFSPKLMIDLLCDKK\VSFLACMGQLFINYPFGGIEVFLLVGMACD HYVDICKLLHYLTIMNWQVCILLFMVAVTG/FLHSMFQIVVVYSLPFCGPNVID/FCD MYPLLEMVCTDTYFIGLTVIANGGAVCMVIFILLLISYGVILNSLKTYSQEGGHKALSTC SSNITVVS/FFDPCIFIYVRPDSNFPIDKFMTVFYTIITSMLNPLIYTLRNLEVRIAVK KLWCKN Protein domains and features |
Variations - SNPs
Chr | Start | End | Type | Variation | AA Change | SNP IDs |
---|---|---|---|---|---|---|
11 | 55,212,096 | 55,212,096 | SNP | A/C | rs4488212 (DbSNP) | |
11 | 55,212,709 | 55,212,709 | SNP | A/C | rs12803747 (DbSNP) | |
11 | 55,212,398 | 55,212,398 | SNP | A/G | rs61916394 (DbSNP) | |
11 | 55,212,507 | 55,212,507 | SNP | A/G | rs72486191 (DbSNP) | |
11 | 55,212,505 | 55,212,505 | SNP | A/G | rs61916395 (DbSNP) | |
11 | 55,212,347 | 55,212,347 | SNP | A/G | rs73465506 (DbSNP) | |
11 | 55,212,611 | 55,212,611 | SNP | A/G | rs61916396 (DbSNP) | |
11 | 55,212,799 | 55,212,799 | SNP | A/T | rs2845646 (DbSNP) | |
11 | 55,212,234 | 55,212,234 | SNP | A/T | rs11229691 (DbSNP) | |
11 | 55,212,249 | 55,212,249 | SNP | C/T | rs72922600 (DbSNP) | |
11 | 55,211,925 | 55,211,925 | SNP | C/T | rs61916376 (DbSNP) | |
11 | 55,212,205 | 55,212,205 | SNP | G/T | rs4545579 (DbSNP) | |
11 | 55,212,737 | 55,212,737 | SNP | T/C | rs2553188 (DbSNP) | |
11 | 55,212,188 | 55,212,188 | SNP | T/C | rs2553190 (DbSNP) | |
11 | 55,212,093 | 55,212,093 | SNP | T/C | rs3949112 (DbSNP) | |
11 | 55,212,033 | 55,212,033 | SNP | T/G | rs2186595 (DbSNP) | |
11 | 55,444,449 | 55,444,449 | SNP | T/C | 1000GP (CEU) | |
11 | 55,444,557 | 55,444,557 | SNP | T/G | 1000GP (CEU) | |
11 | 55,444,617 | 55,444,617 | SNP | C/T | 1000GP (CEU) | |
11 | 55,444,620 | 55,444,620 | SNP | A/C | 1000GP (CEU) | |
11 | 55,444,758 | 55,444,758 | SNP | T/A | 1000GP (CEU, CHBJPT) | |
11 | 55,444,773 | 55,444,773 | SNP | T/C | 1000GP (CEU) | |
11 | 55,445,029 | 55,445,029 | SNP | A/G | 1000GP (CEU) | |
11 | 55,445,135 | 55,445,135 | SNP | G/A | 1000GP (CEU) | |
11 | 55,445,233 | 55,445,233 | SNP | C/A | 1000GP (CEU, CHBJPT) | |
11 | 55,445,261 | 55,445,261 | SNP | T/C | 1000GP (CEU) | |
11 | 55,445,323 | 55,445,323 | SNP | A/T | 1000GP (CEU, CHBJPT) | |
11 | 55,445,031 | 55,445,031 | SNP | G/A | 1000GP (CHBJPT) | |
11 | 100 | -100 | SNP | C/T | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI) |
Variations - CNVs
Chr | Start | End | Type | Sources |
---|---|---|---|---|
11 | 55,153,930 | 55,816,828 | CopyNumber | Variation_0308 (DGV) |
11 | 55,183,726 | 55,258,691 | CopyNumber | Variation_6922 (DGV) |
11 | 54,835,623 | 55,879,426 | CopyNumber | Variation_8690 (DGV) |
11 | 55,121,706 | 55,340,753 | CopyNumber | Variation_9185 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.