OR4A18P Olfactory Receptor
| Gene Symbol | OR4A18P1 (View this gene in GeneCards) |
| Family | 4 |
| Subfamily | A |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | HsOR11.9.2P, ORL3636 |
| External Ids | HGNC: 15155 GeneBank: NG_004240 ORDB: ORL3636 |
| Build #39 labels | OR4A18P |
| Chromosomal location | 11:49,917,490-49,918,377 (-) |
| Cluster | 11@50 |
| Synteny | CLIC#26 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR4A48P | 76.23% | 223 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR4A47EP | 66% | 111 |
| Mouse | Or4a47 | 66% | 105 |
| Rat | Or4a47 | 66% | 106 |
| Cow | OR4A47P | 50% | 144 |
| Orang | OR4A47P | 64% | 105 |
| Horse | OR4A47L | 68% | 105 |
| Chimp | OR4AL2P | 87% | 107 |
| Chimp | OR4AL1P | 87% | 107 |
Sequence information
| Nucleotide sequence |
ATGTATTCAACAACATTGATCTCCACTTTGTCTCTGCATGTTCTCCTTTTATTTTAATTT GTACCATTTTTTTCCCAAATAAAAGTACTTGCACTCACTTAGAGATGCTGAAATAAATTG ATTGGTATAAAGTAAGGTATCTGATTAACCAAATTTACACTAAAGCCAATTGGCCTTTTC ATGGATTATAACACTATGCACAACCACTCCATACTCAAACATGCATTTCTTTCTCCAATG TTATATGATGCAGCACCTAGCTCTTTACAGGACATTTTTTTCTTGGTGGGTCACAGATTT TCCTTCTGTTGGTGATGGCCTAGGCCACTATAGGGCCATCTGCAAGTCCTTGCAGTATTT GGTTGTCATGAAGCAATGGCTGTGTGTTGTGCTGCTGGTGGTGTCCTGGGCTGGAGGATT TTTGCACATAGTAATTCAACTTGGACTTATTTATGGGCTCCCATCTTATGACCCCAATGT CATTGGTCATTTTATTTGTGACATGGACCCCTTAATGAAGCTTGTCTGTGACTACACACT CAACAGATTTGCCTATTTTGCAGGTCATGATTAAATACTAGGTTTTATGTATTTCACTTA TGCTCAGACTGGACTGTTTCCTTTTGGTGATTCGACCTCATTATTCTTTTGTCATTTTTT CCCTAGAGGACTTGGTTCTATAAATCTTGCTATACATAGTTATTATCCCTGTGGCATCTC TAGAGATACGGAGCCTACCATCAGAATTATGATAAAGGTCCCAATGAATTTAATTAGAGA AGAATCACCTTTGGAGATGCACCAGTTGAATGACTCAACAATATGTGTTGCAGTTCAAAT GTGGATAAAGTATCCACAGACTTCTGCCCTTACTTCAAAGAGTATTTG |
| Conceptual translation |
MYSTTLISTLSLHVLLLFXVPFFSQIKVLALTXCX\XVXKVSDXNLHXQLAF SWIITL\QPLHTQTCISFSNVIXSTXFTGHFFLGGSQIFLLLVMA/GHYRAICKSL QYLVVMKQWLCVVLLVVSWAGGFLHIVIQLGLIYGLPSYDPNVIGHFICDMDPLMKLVCD YTLNRFAYFAGHDXLGFMYF\MLRLDCFLLVIRPHYSFVIFSLEDLVLXLLYIVIIP VASLEIRSLP\NYDKGPNEFNXRITFGDAPVEXNNMCCSSNVDKVSTDFCPYFKEYL Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 49,939,384 | 49,939,384 | SNP | A/C | rs61744827 (DbSNP) | |
| 11 | 49,939,086 | 49,939,086 | SNP | C/G | rs724117 (DbSNP) | |
| 11 | 49,939,485 | 49,939,485 | SNP | G/T | rs11040654 (DbSNP) | |
| 11 | 49,939,577 | 49,939,577 | SNP | T/G | rs61739435 (DbSNP) | |
| 11 | 49,917,697 | 49,917,697 | SNP | A/G | 1000GP (CEU) | |
| 11 | 49,917,832 | 49,917,832 | SNP | C/A | 1000GP (CEU) | |
| 11 | 49,917,933 | 49,917,933 | SNP | T/G | 1000GP (CEU, CHBJPT) | |
| 11 | 100 | -100 | SNP | T/G | 1000GP (YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 49,732,291 | 50,117,547 | CopyNumber | Variation_6919 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.