OR4A2P Olfactory Receptor
| Gene Symbol | OR4A2P1 (View this gene in GeneCards) |
| Family | 4 |
| Subfamily | A |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR11-112, HsOR11.10.5P, ORL3569 |
| External Ids | HGNC: 15159 GeneBank: BK004593, NG_004330 ORDB: ORL3569 |
| Build #39 labels | OR4A2P |
| Chromosomal location | 11:54,667,298-54,668,210 (-) |
| Cluster | 11@51 |
| Synteny | CLIC#26 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR4A46P | 93.42% | 304 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR4A2 | 88% | 305 |
| Mouse | Or4a2 | 90% | 305 |
| Rat | Or4a2 | 89% | 305 |
| Cow | OR4A2 | 90% | 305 |
| Orang | OR4A47P | 68% | 303 |
| Horse | OR4A2F | 85% | 305 |
| Horse | OR4A2E | 86% | 304 |
| Chimp | OR4A46P | 92% | 303 |
Sequence information
| Nucleotide sequence |
ATGGAGCAAAGGAAAAATGTGACTGAGTTTGTCCTTGTGGGGCTCACTCAGAGCCCCCAG GGACAGAAAATATTATTTCTTGTGTTCTTGCTCATCTACGTTGTGACAATGGTAGGCAAC ATATTCATTGTTGTGACTGTGGTGGTCAGCCCAACTTTGGATGCCCCATGTACTTCTTCC TTGGCTACTTATCATTTATGGATGCTGTTCATTCTACTACAGTTACCCCAAATATGATTA TAGACTTACTCTATGAGAAGAAAACCATTTCGTTCCAAGCTTGATTACCCAGATTTTTAT AGGACACCTATTTGGGGGTGCTGAGATTTTACTCCTTGTTGTCATGGCCTATGATGGCTA CGTGACCATCTGCAAACCCCTGCATTATTTGACCATCATGAACCAACGGGTGTGCATTCT ACTGCTGCTGTTGGCCTGGGCTGGAGGTTTCTTGCATGCTGTAGTTCAACTTCTTTTTGT TTACAACCTTCCCTTCTGTGGCCCCAATGTCATTGACCATTTCATCTGTGACATGTACCC TTTATTAAAACTTGCCTGCACTGACACCTATGTTACTGGCCTCACTGTGGTTGCCAATGA TGGGGCAATCTGTGTGGTCATCTTTATGCTCTTACTCTTCTCCTATGGGGTCATTCTGCA CTCCCTGAAGAATCTTAGTCAGGAAGGGAGGCACAAAGCCTTATCCACCTGTGGCTCCCA TATCACTGTGGTGATCCTCTTCTTTGTCCCTTGTATTTTCATGTATGTGAGACCTCCTTT GACCTTACCCATTGATAAATCCTTGACTGTGTTTTACACTGTTATCACACCTATGTTGAA CCCTCTAATCTATACTTTAAGAAATGCAGAGATGAAAAATGCTATGAAGAAGCTCTGGAC TAGAAAAAGAAAA |
| Conceptual translation |
MEQRKNVTEFVLVGLTQSPQGQKILFLVFLLIYVVTMVGNIFIVVTVVVSPT/GCPMYF FLGYLSFMDAVHSTTVTPNMIIDLLYEKKTISFQA/ITQIFIGHLFGGAEILLLVVMAY DGYVTICKPLHYLTIMNQRVCILLLLLAWAGGFLHAVVQLLFVYNLPFCGPNVIDHFICD MYPLLKLACTDTYVTGLTVVANDGAICVVIFMLLLFSYGVILHSLKNLSQEGRHKALSTC GSHITVVILFFVPCIFMYVRPPLTLPIDKSLTVFYTVITPMLNPLIYTLRNAEMKNAMKK LWTRKRK Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 51,451,377 | 51,451,377 | SNP | C/T | rs61891425 (DbSNP) | |
| 11 | 51,451,441 | 51,451,441 | SNP | A/G | rs561951 (DbSNP) | |
| 11 | 51,451,575 | 51,451,575 | SNP | A/G | rs542985 (DbSNP) | |
| 11 | 51,451,617 | 51,451,617 | SNP | C/T | rs543099 (DbSNP) | |
| 11 | 51,451,818 | 51,451,818 | SNP | A/G | rs61891426 (DbSNP) | |
| 11 | 51,451,882 | 51,451,882 | SNP | C/T | rs558158 (DbSNP) | |
| 11 | 54,668,049 | 54,668,049 | SNP | A/T | 1000GP (CEU) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 51,192,824 | 51,563,636 | CopyNumber | Variation_8689 (DGV) |
| 11 | 51,228,146 | 51,525,878 | CopyNumber | Variation_48823 (DGV) |
| 11 | 51,372,036 | 51,529,002 | CopyNumber | Variation_53111 (DGV) |
| 11 | 51,449,069 | 51,452,081 | Deletion | #215 (Waszak) |
| 11 | 51,451,246 | 51,451,454 | Del(-12) | #18(modil) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.