Search Olfactory receptors

(e.g. OR1G1, AF087928, Segregating Pseudo)

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OR4A2P Olfactory Receptor

Gene Symbol OR4A2P1 (View this gene in GeneCards)
Family 4
Subfamily A
Pseudogene Yes
CORP pseudogene probability score
Aliases OR11-112, HsOR11.10.5P, ORL3569
External Ids HGNC: 15159   GeneBank: BK004593, NG_004330   ORDB: ORL3569   
Build #39 labels OR4A2P
Chromosomal location 11:54,667,298-54,668,210 (-)
Cluster 11@51
Synteny CLIC#26
Remarks

Most Similar ORs in Humans (Paralogs)

Symbol Percent Length
OR4A46P 93.42% 304

Most Similar ORs in other species (Orthologs)

Specie Symbol Percent Length
Dog OR4A2 88% 305
Mouse Or4a2 90% 305
Rat Or4a2 89% 305
Cow OR4A2 90% 305
Orang OR4A47P 68% 303
Horse OR4A2F 85% 305
Horse OR4A2E 86% 304
Chimp OR4A46P 92% 303

Sequence information

Nucleotide sequence ATGGAGCAAAGGAAAAATGTGACTGAGTTTGTCCTTGTGGGGCTCACTCAGAGCCCCCAG
GGACAGAAAATATTATTTCTTGTGTTCTTGCTCATCTACGTTGTGACAATGGTAGGCAAC
ATATTCATTGTTGTGACTGTGGTGGTCAGCCCAACTTTGGATGCCCCATGTACTTCTTCC
TTGGCTACTTATCATTTATGGATGCTGTTCATTCTACTACAGTTACCCCAAATATGATTA
TAGACTTACTCTATGAGAAGAAAACCATTTCGTTCCAAGCTTGATTACCCAGATTTTTAT
AGGACACCTATTTGGGGGTGCTGAGATTTTACTCCTTGTTGTCATGGCCTATGATGGCTA
CGTGACCATCTGCAAACCCCTGCATTATTTGACCATCATGAACCAACGGGTGTGCATTCT
ACTGCTGCTGTTGGCCTGGGCTGGAGGTTTCTTGCATGCTGTAGTTCAACTTCTTTTTGT
TTACAACCTTCCCTTCTGTGGCCCCAATGTCATTGACCATTTCATCTGTGACATGTACCC
TTTATTAAAACTTGCCTGCACTGACACCTATGTTACTGGCCTCACTGTGGTTGCCAATGA
TGGGGCAATCTGTGTGGTCATCTTTATGCTCTTACTCTTCTCCTATGGGGTCATTCTGCA
CTCCCTGAAGAATCTTAGTCAGGAAGGGAGGCACAAAGCCTTATCCACCTGTGGCTCCCA
TATCACTGTGGTGATCCTCTTCTTTGTCCCTTGTATTTTCATGTATGTGAGACCTCCTTT
GACCTTACCCATTGATAAATCCTTGACTGTGTTTTACACTGTTATCACACCTATGTTGAA
CCCTCTAATCTATACTTTAAGAAATGCAGAGATGAAAAATGCTATGAAGAAGCTCTGGAC
TAGAAAAAGAAAA
Conceptual translation MEQRKNVTEFVLVGLTQSPQGQKILFLVFLLIYVVTMVGNIFIVVTVVVSPT/GCPMYF
FLGYLSFMDAVHSTTVTPNMIIDLLYEKKTISFQA/ITQIFIGHLFGGAEILLLVVMAY
DGYVTICKPLHYLTIMNQRVCILLLLLAWAGGFLHAVVQLLFVYNLPFCGPNVIDHFICD
MYPLLKLACTDTYVTGLTVVANDGAICVVIFMLLLFSYGVILHSLKNLSQEGRHKALSTC
GSHITVVILFFVPCIFMYVRPPLTLPIDKSLTVFYTVITPMLNPLIYTLRNAEMKNAMKK
LWTRKRK

Protein domains and features

Variations - SNPs

Chr Start End Type Variation AA Change SNP IDs
11 51,451,377 51,451,377 SNP C/T rs61891425 (DbSNP)
11 51,451,441 51,451,441 SNP A/G rs561951 (DbSNP)
11 51,451,575 51,451,575 SNP A/G rs542985 (DbSNP)
11 51,451,617 51,451,617 SNP C/T rs543099 (DbSNP)
11 51,451,818 51,451,818 SNP A/G rs61891426 (DbSNP)
11 51,451,882 51,451,882 SNP C/T rs558158 (DbSNP)
11 54,668,049 54,668,049 SNP A/T 1000GP (CEU)

Variations - CNVs

Chr Start End Type Sources
11 51,192,824 51,563,636 CopyNumber Variation_8689 (DGV)
11 51,228,146 51,525,878 CopyNumber Variation_48823 (DGV)
11 51,372,036 51,529,002 CopyNumber Variation_53111 (DGV)
11 51,449,069 51,452,081 Deletion #215 (Waszak)
11 51,451,246 51,451,454 Del(-12) #18(modil)

Haplotypes

Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.