OR4A43P Olfactory Receptor
| Gene Symbol | OR4A43P1 (View this gene in GeneCards) |
| Family | 4 |
| Subfamily | A |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | HsOR11.8.17P |
| External Ids | HGNC: 31262 GeneBank: NG_004328 |
| Build #39 labels | |
| Chromosomal location | 11:48,526,064-48,526,974 (+) |
| Cluster | 11@48 |
| Synteny | CLIC#26 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR4A7P | 91.75% | 303 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR4A39 | 74% | 297 |
| Mouse | Or4a39 | 75% | 297 |
| Rat | Or4a77e | 72% | 297 |
| Cow | OR4A2 | 67% | 300 |
| Orang | OR4A47P | 65% | 302 |
| Horse | OR4A142P | 75% | 302 |
| Chimp | OR4A7P | 90% | 303 |
Sequence information
| Nucleotide sequence |
ATGAGACTGAGTATCAATGTTACAGCATTTGTCCTCCTAGGCCTTACTCAGGATCCTGAT GTGTAAAATGCATTATTTGTCATACGGTTTACTCACATACTTTATGACTATGGTGGGGAA CCTGCTCATTGTGGTGACTATTATTGCCAACCCCACCTTAGGCTCCCCAGTGTACTTCTT CCTTGCCTGCTTGTCATTTATAGATGCTGTGTATTCCACCACCATTTCTCCCAAATTGAT TGTAGGCTATCTCCATGATAAAAAGACTGTTTCCTTCCAAGCTTGCATGGGTCAGCCATT TTATAGACCACTTAGTTGGCGGTGCTGAGGTCTTCCTTCTGTTGGTGATGGCCTATAATC GCTATGTAGCCATCTGTAAGCCACTGCACTATTTCACCATCATGAATTGACAGGTTTGCA TCCTTCTGTTGGTGGTGGCTGTCACTGCAGGTTTTGTGCATTCTGTGTTTCAAATTTTAG TTGCGTACAGTCTCCTTTTCTGTGGTCCCAATATCATTGACCACTTTTTCTGTGACATGT ACCCATTATTGGAACTGGCACACACTGACACCTACTTTATAGGCCTCACTGAGGTTGCCA ATGGTGGAGGAATCTGTATGGTCGTGTTCATCCTTCTACTAATCTCCTATGGGGTCATCC TAATCTCCCTTAAAACTTATAGTCAGGAAGGGAGGCATAAAGCCCTGTCTACCTGCAGCT CCCACATTACCGTGACTGTCCTGTTTTTTGTTCCCTGTAGTTTCATGTATGTTAGACCTG TTTCAAACTTTCCTATTAATAAATTAATTACTGTGTTTTATACAGTTATCACACCCATGT TGAATCCATTAATATACACATTGAGAAACTGAGAGATGAAAAATGCTATAGAAAACCTCT GGTGTAAATAT |
| Conceptual translation |
MRLSINVTAFVLLGLTQDPDVXALFVIR\LTYFMTMVGNLLIVVTIIANPTLGSPVYF FLACLSFIDAVYSTTISPKLIVGYLHDKKTVSFQACMGQ\FIDHLVGGAEVFLLLVMAY NRYVAICKPLHYFTIMNXVCILLLVVAVTAGFVHSVFQILVAYSLLFCGPNIIDHFFCD MYPLLELAHTDTYFIGLTEVANGGGICMVVFILLLISYGVILISLKTYSQEGRHKALSTC SSHITVTVLFFVPCSFMYVRPVSNFPINKLITVFYTVITPMLNPLIYTLRNXMKNAIEN LWCKY Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 100 | -100 | SNP | T/A | 1000GP (YRI, YRI) | |
| 11 | 48,526,164 | 48,526,164 | SNP | T/A | 1000GP (CEU, CHBJPT) | |
| 11 | 48,526,281 | 48,526,281 | SNP | A/G | 1000GP (CEU) | |
| 11 | 48,526,282 | 48,526,282 | SNP | C/G | 1000GP (CEU) | |
| 11 | 48,547,716 | 48,547,716 | SNP | A/T | rs11039806 (DbSNP) | |
| 11 | 48,547,833 | 48,547,833 | SNP | A/G | rs61916491 (DbSNP) | |
| 11 | 48,548,371 | 48,548,370 | Ins(1) | -/C | rs35541363 (DbSNP) | |
| 11 | 48,548,490 | 48,548,490 | SNP | A/G | rs55676960 (DbSNP) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 48,303,671 | 48,863,606 | CopyNumber | Variation_3848 (DGV) |
| 11 | 48,346,202 | 48,972,502 | CopyNumber | Variation_9183 (DGV) |
| 11 | 48,365,757 | 49,068,634 | CopyNumber | Variation_2922 (DGV) |
| 11 | 48,479,497 | 48,689,328 | CopyNumber | Variation_5013 (DGV) |
| 11 | 48,534,771 | 48,592,092 | CopyNumber | Variation_9184 (DGV) |
| 11 | 48,547,516 | 48,550,526 | Deletion | #209 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.