Search Olfactory receptors

(e.g. OR1G1, AF087928, Segregating Pseudo)

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OR4A4P Olfactory Receptor

Gene Symbol OR4A4P1 (View this gene in GeneCards)
Family 4
Subfamily A
Pseudogene Yes
CORP pseudogene probability score
Aliases OR11-107, HsOR11.10.6
External Ids HGNC: 15161   GeneBank: AB065752, AF399577, BK004379, NG_004331   
Build #39 labels OR4A4
Chromosomal location 11:54,659,666-54,660,592 (-)
Cluster 11@51
Synteny CLIC#26
Remarks

Most Similar ORs in Humans (Paralogs)

Symbol Percent Length
OR4A47 93.85% 309

Most Similar ORs in other species (Orthologs)

Specie Symbol Percent Length
Dog OR4A47FP 83% 308
Dog OR4A47 82% 308
Dog OR4A47C 81% 308
Mouse Or4a47 78% 306
Rat Or4a47 78% 307
Cow OR4A47D 77% 306
Orang OR4A47P 93% 309
Horse OR4A47 82% 306
Horse OR4A47L 81% 303
Chimp OR4A47 93% 309
Chimp OR4A47H 95% 299

Expression evidences

Source Accession
GNF Atlas2 gnf1h05421_at

Sequence information

Nucleotide sequence ATGGAGCCAAGGAAAAATGTGACTGACTTTGTCCTCTTGGGCTTCACACAGAATCCAAAG
GAGCAGAAAGTACTTTTTGTTATGTTCTTGCTCTTCTACATTTTGACCATGGTGGGCAAC
CTGCTCATTGTAGTGACCGTAACTGTCAGTGAGACCCTGGGCTCACCAATGTCCTTCTTT
CTTGCTGGCTTAACATTTATAGATATCATTTATTCTTCATCCATTTCCCCCAGATTGATT
TCAGACTTGTTCTTTGGGAATAATTCCATATCCTTCCAATCTTTCATGGCCCAGCTCTTT
ATCGAGCACCTTTTTGGTGGGTCAGAGGTCTTTCTCCTGTTGGTGATGGCCTATGACCGC
TATGTGGCCATCTGTAAGCCCTTGCATTATTTGGTTATCATGAGACAATGGGTGTGTGTT
TTGCTGCTGGTAGTGTCCTGGGTTGGAGGATTTCTGCAATCAGTATTTCAACTTAGCATT
ATTTATGGGCTCCCATTCTGTGGCCCCAATGTCATTGATCATTTTTTCTGTGACATGTAT
CCCTTATTGAAACTGGCCTGCACTGACACCCATGTTATTGGCCTCTTAGTGGTGGCCAAT
GGAGGACTGTCTTGCACTATTGCGTTTCTGCTCTTACTCATCTCTTATGGTGTCATCCTG
CACTCTCTAAAGAAACTTAGTCAGAAAGGGAGGCAAAAAGCCCACTCAACCTGCAGTTCC
CACATCACTGTGGTTGTCTTCTTCTTTGTTCCTTGTATTTTTATGTGTGCTAGACCTGCT
AGGACCTTCTCCATTGACAAATCAGTGAGTGTGTTTTATACAGTCATAACCCCAATGCTG
AACCCCTTAATCTACACTCTGAGAAATTCTGAGATGACAAGTGCTATGAAGAAGCTTTAG
AGCAGAGACCTCATATCAAGTAGTACA
Conceptual translation MEPRKNVTDFVLLGFTQNPKEQKVLFVMFLLFYILTMVGNLLIVVTVTVSETLGSPMSFF
LAGLTFIDIIYSSSISPRLISDLFFGNNSISFQSFMAQLFIEHLFGGSEVFLLLVMAYDR
YVAICKPLHYLVIMRQWVCVLLLVVSWVGGFLQSVFQLSIIYGLPFCGPNVIDHFFCDMY
PLLKLACTDTHVIGLLVVANGGLSCTIAFLLLLISYGVILHSLKKLSQKGRQKAHSTCSS
HITVVVFFFVPCIFMCARPARTFSIDKSVSVFYTVITPMLNPLIYTLRNSEMTSAMKKLXbr/>SRDLISSST

Protein domains and features

Variations - SNPs

Chr Start End Type Variation AA Change SNP IDs
11 100 -100 SNP G/A 1000GP (YRI)
11 51,459,004 51,459,004 SNP A/C rs5009057 (DbSNP)
11 51,459,057 51,459,057 SNP A/G rs5009058 (DbSNP)
11 51,459,155 51,459,155 SNP G/T rs4993984 (DbSNP)
11 51,459,181 51,459,181 SNP C/T rs5009059 (DbSNP)
11 51,459,193 51,459,193 SNP A/C rs4993983 (DbSNP)
11 51,459,256 51,459,256 SNP A/G rs4993982 (DbSNP)
11 51,459,299 51,459,299 SNP A/G rs4993981 (DbSNP)
11 51,459,304 51,459,304 SNP G/T rs4993980 (DbSNP)
11 51,459,330 51,459,330 SNP A/C rs4993979 (DbSNP)
11 51,459,369 51,459,369 SNP C/T rs4993978 (DbSNP)
11 51,459,421 51,459,421 SNP A/T rs4993977 (DbSNP)
11 51,459,441 51,459,441 SNP G/T rs5027926 (DbSNP)
11 54,659,851 54,659,851 SNP A/G 1000GP (CEU)
11 54,660,222 54,660,222 SNP G/A 1000GP (CEU, CHBJPT)

Variations - CNVs

Chr Start End Type Sources
11 51,192,824 51,563,636 CopyNumber Variation_8689 (DGV)
11 51,228,146 51,525,878 CopyNumber Variation_48823 (DGV)
11 51,372,036 51,529,002 CopyNumber Variation_53111 (DGV)
11 51,459,106 51,459,263 Del(-16) #16(modil)

Haplotypes

Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.