OR4A9P Olfactory Receptor
Gene Symbol | OR4A9P1 (View this gene in GeneCards) |
Family | 4 |
Subfamily | A |
Pseudogene | Yes |
CORP pseudogene probability score | |
Aliases | OR11-119, HsOR11.11.5P, ORL3589 |
External Ids | HGNC: 15166 GeneBank: BK004552, NG_004333 ORDB: ORL3589 |
Build #39 labels | OR4A9P |
Chromosomal location | 11:55,388,529-55,389,472 (+) |
Cluster | 11@56 |
Synteny | CLIC#26 |
Remarks |
Most Similar ORs in Humans (Paralogs)
Symbol | Percent | Length |
---|---|---|
OR4A13P | 78.98% | 314 |
OR4A45P | 79.6% | 299 |
OR4A5 | 81.01% | 316 |
Most Similar ORs in other species (Orthologs)
Specie | Symbol | Percent | Length |
---|---|---|---|
Dog | OR4A39 | 72% | 306 |
Mouse | Or4a39 | 72% | 309 |
Rat | Or4a77e | 68% | 309 |
Cow | OR4A2 | 65% | 303 |
Orang | OR4A47P | 62% | 304 |
Horse | OR4A124 | 71% | 309 |
Chimp | OR4A13P | 83% | 303 |
Chimp | OR4A40CP | 80% | 302 |
Sequence information
Nucleotide sequence |
ATGAGACCTAATAACAGCATTACAGAATTTGTCCTCCTGGGATTCTCTCAGGATCCTGGT ATGCAAAAAGAATTATTTGTCATGTTTTTATTCACATACGTTGTGACTGTGTTGGGGAAC CAGCTCATTGTGGTGACTATCATTGCCAGCCCTTCCTTGGGCTCCCCAATGTACTTCTTC CTTGCCTGCCTGTCATTTATAGATGCTGCATATTTCACTGTCATTTCTCCCAAATTGATT GTGGACTTACTCTGTGATAAAAAGACTATTTCCTTCCAAACGTTCATGGGCCAACTATTT ATAGACCACTTCTTTGGTGGTGCAGAGGCCTTCCTTCTGGTGGTGATGGCCTATGATCGC TATGTTGCCATCTGTAAGACATTGCACTATTTGACCATCATGACTCGACAGGTTTGTATC CTTGCATTGCTGGTGGCTGCGACAGGCGGTTTTGTGCATTCTGTGTTTCAAATTGTTGTT GTGTACAGTCTCCCTTTCTGTGGCGCCAATGTCATTGATCATTTCAGTTGTGACATGTAT CCATTATTGGAACTGGCATGAACTGACACCTACTTTATAGGCCTCACTGTTGTTTTCAGT GGTGGAGCACTCTGTATGGTCATCTTCACCCTTCTAATAATTTCCTATAGGGTCATCCTA AACTCCCTTAAAACTTACACTCAGGAAGGGAGGCATAAAGCCCTGTCTACCTGCAGCTCC CACATCACTGTGATTGTTCTCTTTTTATTCCCTGTATTTTCATATATGTGAGACCTGTTT CAAACTTTTCTATTGACACATTCATGACTGTCTTTTATACAGTTATCACACCCAAGTTGA ATCCTTTAATATACACTTTCAGAAATTCAGAGATGAGAAATGTTATAGAAAAACTCTTGG TGAAAAAGGTAACTATATTTAGAATAACAGGGTCCATCCTCATG |
Conceptual translation |
MRPNNSITEFVLLGFSQDPGMQKELFVMFLFTYVVTVLGNQLIVVTIIASPSLGSPMYFF LACLSFIDAAYFTVISPKLIVDLLCDKKTISFQTFMGQLFIDHFFGGAEAFLLVVMAYDR YVAICKTLHYLTIMTRQVCILALLVAATGGFVHSVFQIVVVYSLPFCGANVIDHFSCDMY PLLELAXDTYFIGLTVVFSGGALCMVIFTLLIISYRVILNSLKTYTQEGRHKALSTCSS HITVIVL/FIPCIFIYVRPVSNFSIDTFMTVFYTVITPKLNPLIYTFRNSEMRNVIEKL LVKKVTIFRITGSILM Protein domains and features |
Variations - SNPs
Chr | Start | End | Type | Variation | AA Change | SNP IDs |
---|---|---|---|---|---|---|
11 | 55,154,704 | 55,154,704 | large insertion | 55945bp insertion | rs72486104 (DbSNP) | |
11 | 55,091,194 | 55,091,194 | large insertion | 68235bp insertion | rs72488330 (DbSNP) | |
11 | 55,106,764 | 55,106,764 | large insertion | 75252bp insertion | rs72493768 (DbSNP) | |
11 | 55,156,065 | 55,156,065 | SNP | A/G | rs56131310 (DbSNP) | |
11 | 55,156,173 | 55,156,173 | SNP | A/G | rs61916230 (DbSNP) | |
11 | 55,156,150 | 55,156,150 | SNP | C/T | rs73482054 (DbSNP) | |
11 | 55,156,941 | 55,156,941 | SNP | C/T | rs61916231 (DbSNP) | |
11 | 55,156,434 | 55,156,434 | SNP | C/T | rs11229374 (DbSNP) | |
11 | 55,156,444 | 55,156,444 | SNP | C/T | rs11229375 (DbSNP) | |
11 | 55,156,124 | 55,156,124 | SNP | C/T | rs61916229 (DbSNP) | |
11 | 55,388,589 | 55,388,589 | SNP | A/G | 1000GP (CEU) | |
11 | 55,388,648 | 55,388,648 | SNP | C/T | 1000GP (CEU) | |
11 | 55,388,958 | 55,388,958 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
11 | 55,388,968 | 55,388,968 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
11 | 55,389,380 | 55,389,380 | SNP | T/C | 1000GP (CEU) | |
11 | 55,389,427 | 55,389,427 | SNP | G/A | 1000GP (CEU) | |
11 | 55,389,465 | 55,389,465 | SNP | T/C | 1000GP (CEU) | |
11 | 55,388,798 | 55,388,798 | SNP | T/C | 1000GP (CHBJPT) | |
11 | 100 | -100 | SNP | A/G | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI) |
Variations - CNVs
Chr | Start | End | Type | Sources |
---|---|---|---|---|
11 | 55,153,930 | 55,816,828 | CopyNumber | Variation_0308 (DGV) |
11 | 54,835,623 | 55,879,426 | CopyNumber | Variation_8690 (DGV) |
11 | 55,121,706 | 55,340,753 | CopyNumber | Variation_9185 (DGV) |
11 | 55,083,434 | 55,156,434 | CopyNumber | Variation_48825 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.