OR4C10P Olfactory Receptor
| Gene Symbol | OR4C10P1 (View this gene in GeneCards) |
| Family | 4 |
| Subfamily | C |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | HsOR11.8.11P, ORL3501 |
| External Ids | HGNC: 14800 GeneBank: AB065546, AF399444, NG_002264 ORDB: ORL3501 |
| Build #39 labels | OR4C10P |
| Chromosomal location | 11:48,432,220-48,433,173 (-) |
| Cluster | 11@48 |
| Synteny | CLIC#26 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR4C46 | 94.82% | 309 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR4C10 | 88% | 309 |
| Dog | OR4C10C | 86% | 309 |
| Mouse | Or4c10 | 86% | 311 |
| Rat | Or4c10b | 82% | 309 |
| Rat | Or4c105 | 81% | 309 |
| Cow | OR4C10G | 85% | 309 |
| Cow | OR4C10 | 85% | 306 |
| Orang | OR4C9P | 84% | 309 |
| Horse | OR4C10 | 85% | 310 |
| Chimp | OR4C46P | 92% | 307 |
Sequence information
| Nucleotide sequence |
ATGCAATTAATCATCACATGAAATACATGGAGAATAGGAATAACGTGACAGAGTTTGTTT TACTAGGGCTTACAGAGAATCCAAAGATGCAGAAAATCATATTTGTTGTGTTTTTTTGTC ATCTATATCATCACTGTGGTGGGAAATGCGCTCATTGTGGTCACCATCACTGCCAGCCCA TCACTGGGGTCCCCCATGTACCTTTTCCTGGCCTATCTCTCCTTTATAGATGCCTGCTAT TCTTCTGTCAATACCCCTAAGCTGATCACAGATTCACTCTATGGAAAGAACACCATCCTA TTCAATGGATGCATGACTCAAGTCTTTGGAGAACATTTCTTCGGAGGTGCAGAGGGTATC CTACTTACTGTGATGGCCTATGACCGCTATGTGGCCATCTGCAAGCCCTTGCACTATATG ACTATCATGAACCAGTGTGTGTATGCCCTGCTAATGGGAGTGGTGTGGATGGGAGGCTTT CTTCATGCAACCATACAGATCCTCTTCATCTTCCAATTACCTTTCTGTGGTCCTAATGTC ATAGATCACTTTATGTGTGATCTGAACCCTTTGCTCAACCTCGCCTGCACTGACACCCAT ATGCTGGGACTCTTCATTGCTGCCAACAGTGGATTCATCTGCTTGTTAAACTTTGTCCTC CTGCTGGTCTCCTATGTGGTCATCTTGCGCTCCCTAAGGACTCACAGCTTGGAGGCAAGG CACAAAGCCCTCTCCACCTGTGTCTCCCACATCACAGTTGTCATCTTATTCTTTGTGCCC TGCATATTTGTGTACATGAGACCTGCAGCTACTTTACCTATTGATAAAGCAGTTGCTATA TTCTACACTATGATAACTCCTATGTTAAACCCCTTAATCTATACCTTGAGGAATGCCCAG ATGAAAAATGCCATCAGGAAATTGTGTAGTAGAAAGGACATTTCAGGTAACAAA |
| Conceptual translation |
MQLIIT/KYMENRNNVTEFVLLGLTENPKMQKIIFVVFF\IYIITVVGNALIVVTITA SPSLGSPMYLFLAYLSFIDACYSSVNTPKLITDSLYGKNTILFNGCMTQVFGEHFFGGAE GILLTVMAYDRYVAICKPLHYMTIMNQCVYALLMGVVWMGGFLHATIQILFIFQLPFCGP NVIDHFMCDLNPLLNLACTDTHMLGLFIAANSGFICLLNFVLLLVSYVVILRSLRTHSLE ARHKALSTCVSHITVVILFFVPCIFVYMRPAATLPIDKAVAIFYTMITPMLNPLIYTLRN AQMKNAIRKLCSRKDISGNK Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 48,447,116 | 48,447,119 | large insertion | 9809bp insertion | rs67368770 (DbSNP) | |
| 11 | 48,453,787 | 48,453,787 | SNP | A/G | rs4882063 (DbSNP) | |
| 11 | 48,454,377 | 48,454,377 | SNP | C/T | rs73462798 (DbSNP) | |
| 11 | 48,432,235 | 48,432,235 | SNP | G/A | 1000GP (CEU) | |
| 11 | 100 | -100 | SNP | A/C | 1000GP (YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 48,365,757 | 49,068,634 | CopyNumber | Variation_2922 (DGV) |
| 11 | 48,303,671 | 48,863,606 | CopyNumber | Variation_3848 (DGV) |
| 11 | 48,447,107 | 48,456,924 | CopyNumber | Variation_5627 (DGV) |
| 11 | 48,346,202 | 48,972,502 | CopyNumber | Variation_9183 (DGV) |
| 11 | 48,451,772 | 48,454,825 | Deletion | #203 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.