OR4C7P Olfactory Receptor
| Gene Symbol | OR4C7P1 (View this gene in GeneCards) |
| Family | 4 |
| Subfamily | C |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | HsOR11.10.7P, ORL3489 |
| External Ids | HGNC: 14768 GeneBank: NG_002229 ORDB: ORL3489 |
| Build #39 labels | OR4C7P |
| Chromosomal location | 11:54,635,028-54,635,995 (+) |
| Cluster | 11@51 |
| Synteny | CLIC#26 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR4C13 | 90.94% | 309 |
| OR4C9P | 90.88% | 318 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR4C10 | 82% | 309 |
| Dog | OR4C10C | 80% | 309 |
| Mouse | Or4c10 | 82% | 303 |
| Rat | Or4c10b | 79% | 309 |
| Cow | OR4C10G | 80% | 311 |
| Cow | OR4C10 | 81% | 303 |
| Orang | OR4C9P | 91% | 308 |
| Horse | OR4C10 | 80% | 310 |
| Chimp | OR4C9P | 94% | 308 |
Sequence information
| Nucleotide sequence |
TGTTTTCTTTTCAGGTAATGCAATTAGCCACCATTTGAAATACATGGCGAATAGAAACAA CGTGACAGAGTTTATTCTATTGGGGCTTACAGAGAATCCAAAAATGCAGAAAATCATATT TGTTGTGTTTTGTCATCTACATCACCACCATGATAGGAAATGTGCTCATTGTGGTCACCA TCACTGCCAGCCCATCATTGAGGTCCCCCATGTAATTTTTCCTGGCCTATCTGTCCTTTA TTGATGCCTGCTATTCCTCTGTCAATGTCTCTAAGCTGATCACAGATTCACTCTATGAAA ACAAGACTATCTTACTCAATGGATGTATGACTCAAGTCTTTGGAGAACATTTTTTCAGAG GTGTTGAGGTCATCCTACTTACTGTAATGGCCTATGACTGCTATGTGGTCATCTGCAAGC CCTTGCGCTATACCACCATCATGAAGCAGCATGTTTGTAGCCTGCTAGTGGGAGTGTCAC GGGTGGGAGGCTTTCTTCATGCAACCATACAGATCCTCTTCATCTTCCAATTACCTTTCT GTAGTTCTAATGTCATAGATCACTTTACGTGTGATCTCAACCCTTTGCTCAATCTTGCCT GCACTAATACCCACACTCTAGGACTCTTCGTTGCTGCCAACAGTGGGTTCATATGCCTGT TAAACTTTCTCTTGCTCCTGGTCTCCTATGTGGTCATACTGTACTCCTTAAGGACCCACA GCTTAGAGGCAAGGCACAAAGGCCTCTCCACCTGTGTCTCCCACAACACAGTTGTCATCT TATTCTTTATACCCTGCATATTTGTGTACATGAGACCTCCAGCTACTTTACCCATTGATA AAGCAGTTGCTGTATTCTACACTATGATAACTCCTATGTTAAACCCCTTAATCTACACCT TGAGGAATGCTCAGATGAAAAATGCCATTAGGAAATTGTGTAGTAGGAAAGCTATTTCAA GTGTCAAA |
| Conceptual translation |
CFLFRXN\HHLKYMANRNNVTEFILLGLTENPKMQKIIFVVF\IYITTMIGNVLIVV TITASPSLRSPMXFLAYLSFIDACYSSVNVSKLITDSLYENKTILLNGCMTQVFGEHFF RGVEVILLTVMAYDCYVVICKPLRYTTIMKQHVCSLLVGVSRVGGFLHATIQILFIFQLP FCSSNVIDHFTCDLNPLLNLACTNTHTLGLFVAANSGFICLLNFLLLLVSYVVILYSLRT HSLEARHKGLSTCVSHNTVVILFFIPCIFVYMRPPATLPIDKAVAVFYTMITPMLNPLIY TLRNAQMKNAIRKLCSRKAISSVK Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 51,483,852 | 51,483,852 | Del(1) | -/G | rs34676785 (DbSNP) | |
| 11 | 51,483,423 | 51,483,423 | SNP | A/C/T | rs4614433 (DbSNP) | |
| 11 | 51,484,198 | 51,484,198 | SNP | A/G | rs11820009 (DbSNP) | |
| 11 | 51,483,353 | 51,483,353 | SNP | A/G | rs72908563 (DbSNP) | |
| 11 | 51,483,331 | 51,483,331 | SNP | C/T | rs72482368 (DbSNP) | |
| 11 | 51,483,388 | 51,483,388 | SNP | C/T | rs61892965 (DbSNP) | |
| 11 | 51,483,304 | 51,483,304 | SNP | C/T | rs7482674 (DbSNP) | |
| 11 | 54,635,975 | 54,635,975 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 11 | 54,635,722 | 54,635,722 | SNP | A/T | 1000GP (CEU) | |
| 11 | 100 | -100 | SNP | C/T | 1000GP (YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 51,192,824 | 51,563,636 | CopyNumber | Variation_8689 (DGV) |
| 11 | 51,228,146 | 51,525,878 | CopyNumber | Variation_48823 (DGV) |
| 11 | 51,372,036 | 51,529,002 | CopyNumber | Variation_53111 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.