OR4C9P Olfactory Receptor
| Gene Symbol | OR4C9P1 (View this gene in GeneCards) |
| Family | 4 |
| Subfamily | C |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | HsOR11.8.12P, ORL3498 |
| External Ids | HGNC: 14796 GeneBank: AB065548, NG_002267 ORDB: ORL3498 |
| Build #39 labels | OR4C9P |
| Chromosomal location | 11:48,464,065-48,465,020 (-) |
| Cluster | 11@48 |
| Synteny | CLIC#26 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR4C13 | 90.16% | 305 |
| OR4C7P | 90.88% | 318 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR4C10 | 84% | 302 |
| Mouse | Or4c10 | 83% | 300 |
| Mouse | Or4c10b | 81% | 303 |
| Rat | Or4c10b | 81% | 303 |
| Cow | OR4C10G | 84% | 303 |
| Cow | OR4C10 | 82% | 304 |
| Orang | OR4C3 | 63% | 301 |
| Horse | OR4C10 | 80% | 305 |
| Horse | OR4C10IP | 83% | 245 |
| Chimp | OR4C7P | 92% | 304 |
| Chimp | OR4C13 | 90% | 305 |
Sequence information
| Nucleotide sequence |
TGTTTTCTTTTCAGGTATTGTAATTAACCACCATTTGAAATACATGGTGAATAGAAACAA TGTGACAGAGTTTATTCTACTGGGGCTTATAGAGAATCCAAAAATGCAGAAAATCATATT TGTTGTGTTTTGTCATCTACATCACCACCATGATAGGAAATGTGCTCATTGTGGTCACCG TCACTGCCAGCCCATCATTGAGGTCCCCCATGTACTTTTACCTGGCCTATCTGTCCTTTA TTGATGCCTGCTATTCCTCCGTCAATGCCCCTAAGCTGATCACAGATTCACTCTATGAAA ACAAGACTATCTTACTCAATGGATGTATGACTCAAGTCTTTGGAGAACATTTTTTCGGAG GTGTTGAGGTCATCCTACTTACTGTAATGGCCTATGACCGCTACGTGGTCATCTGCAAGC CCTTGCACTATACCACCATCATGAAGCAGCATGTTTGTAGCCTGCTAGTGGGAGTGTCAT GGGTAGGAGGCTTTCTTCATGCAACCGTACAGATCCTCTTCATCTTCCAATTACCTTTCT GTGGTCCTAATGTCATAGATCACTTTATGTGGGATCTCAACCCTTTGCTCAATCTTGTCT GCACTAATACCCACACTCTAGGACTCTTCGTTGCTGCCAACAGTGGGTTCATATGCCTGT TAAACTTTCTCTTGCTCCTGGTCTCCTATATGGTCATACTGTACTCCTTAAGGACCCACA GCTTAGAGGCAAGGTGCAAAGCCCTCTCCACCTGTGTCTCCCACATCACAGTTGTCATCT TATTCTTTATACCCTGCATATTTGTGTACATGAGACCTCCAGCTACTTTACCCATTGATA AAGCAGTTGCTGTATTCTACACTATGATAGCTCCTATGTTAAACCCCTTAATCTACACCT TGAGGAATGCTCAGATGAAAAATGCCATTAGGAAATTGTGTAGTAGGAAAGCTATT |
| Conceptual translation |
CFLFRYCNXPFEI\VNRNNVTEFILLGLIENPKMQKIIFVVF\IYITTMIGNVLIVV TVTASPSLRSPMYFYLAYLSFIDACYSSVNAPKLITDSLYENKTILLNGCMTQVFGEHFF GGVEVILLTVMAYDRYVVICKPLHYTTIMKQHVCSLLVGVSWVGGFLHATVQILFIFQLP FCGPNVIDHFMWDLNPLLNLVCTNTHTLGLFVAANSGFICLLNFLLLLVSYMVILYSLRT HSLEARCKALSTCVSHITVVILFFIPCIFVYMRPPATLPIDKAVAVFYTMIAPMLNPLIY TLRNAQMKNAIRKLCSRKAI Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 100 | -100 | SNP | A/G | 1000GP (YRI, YRI, YRI, YRI, YRI) | |
| 11 | 48,464,325 | 48,464,325 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 11 | 48,485,877 | 48,485,877 | SNP | C/T | rs9667626 (DbSNP) | |
| 11 | 48,486,525 | 48,486,525 | SNP | A/C/G | rs4882074 (DbSNP) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| CopyNumber | 132 (Hasin) | |||
| 11 | 48,303,671 | 48,863,606 | CopyNumber | Variation_3848 (DGV) |
| 11 | 48,346,202 | 48,972,502 | CopyNumber | Variation_9183 (DGV) |
| 11 | 48,365,757 | 49,068,634 | CopyNumber | Variation_2922 (DGV) |
| 11 | 48,479,497 | 48,689,328 | CopyNumber | Variation_5013 (DGV) |
| 11 | 48,483,617 | 48,486,672 | Deletion | #204 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.