OR4D11 Olfactory Receptor
| Gene Symbol | OR4D111 (View this gene in GeneCards) |
| Family | 4 |
| Subfamily | D |
| Pseudogene | No |
| CORP pseudogene probability score | 0.8 (pseudogene) |
| Aliases | OR11-252, HsOR11.13.10 |
| External Ids | HGNC: 15174 GeneBank: AB065810, AF399440, BK004688, NM_001004706 |
| Build #39 labels | OR4D11P |
| Chromosomal location | 11:59,503,576-59,504,508 (+) |
| Cluster | 11@59a |
| Synteny | CLIC#27 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR4D10 | 81.35% | 311 |
| OR4D8P | 80.46% | 302 |
| OR4D9 | 82.26% | 310 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR4D9C | 85% | 311 |
| Dog | OR4D9D | 84% | 311 |
| Dog | OR4D9 | 83% | 310 |
| Mouse | Or4d11 | 88% | 310 |
| Rat | Or4d11 | 87% | 310 |
| Cow | OR4D9 | 81% | 310 |
| Cow | OR4D9D | 81% | 311 |
| Orang | OR4D10 | 83% | 311 |
| Orang | OR4D10F | 83% | 305 |
| Orang | OR4D9P | 81% | 305 |
| Horse | OR4D11GP | 90% | 309 |
| Horse | OR4D11FP | 90% | 309 |
| Horse | OR4D11EP | 90% | 309 |
| Chimp | OR4D9 | 82% | 310 |
| Chimp | OR4D10 | 80% | 311 |
| Chimp | OR4D8 | 81% | 302 |
Sequence information
| Nucleotide sequence |
ATGGAGTTGGGAAATGTCACCAGAGTAAAAGAATTTATATTTCTGGGACTTACTCAATCC CAAGACCAGAGTTTGGTCTTGTTTCTTTTTTTATGTCTTGTGTACATGACGACTCTGCTG GGAAACCTCCTCATCATGGTCACCGTGACCTGTGAGTCTCGCCTTCACACCCCCATGTAC TTCCTGCTCCGCAATCTAGCCATCCTTGACATCTGCTTCTCCTCCACAACTGCTCCTAAA GTCTTGCTGGACCTTCTGTCAAAGAAAAAGACCATATCCTATACAAGCTGCATGACACAG ATATTTCTCTTCCACCTCCTTGGTGGGGCAGACATTTTTTCTCTCTCTGTGATGGCGTTT GACTGCTACATGGCCATCTCCAAGCCCCTGCACTATGTGACCATCATGAGTAGAGGGCAA TGCACTGCCCTCATCTCTGCCTCTTGGATGGGGGGCTTTGTCCACTCCATCGTGCAGATC TCCCTGTTGCTGCCTCTCCCTTTCTGTGGACCCAATGTTCTTGACACTTTCTACTGCGAT GTCCCCCAGGTCCTCAAACTCACTTGCACTGACACTTTTGCTCTTGAGTTCTTGATGATT TCCAACAATGGCCTGGTCACTACCCTGTGGTTTATCTTCCTGCTTGTGTCCTACACAGTC ATCCTAATGACGCTGAGGTCTCAGGCAGGAGGGGGCAGGAGGAAAGCCATCTCCACTTGC ACCTCCCACATCACTGTGGTGACCCTGCATTTTGTGCCCTGCATCTATGTCTATGCCCGG CCCTTCACTGCCCTCCCCACAGAAAAGGCCATCTCTGTCACCTTCACTGTCATCTCCCCT CTGCTGAACCCTTTGATCTACACTCTGAGGAACCAGGAAATGAAGTCAGCCATGAGAAGA CTGAAGAGAAGACTCGTGCCTTCTGAAAGGGAA |
| Conceptual translation |
MELGNVTRVKEFIFLGLTQSQDQSLVLFLFLCLVYMTTLLGNLLIMVTVTCESRLHTPMY FLLRNLAILDICFSSTTAPKVLLDLLSKKKTISYTSCMTQIFLFHLLGGADIFSLSVMAF DCYMAISKPLHYVTIMSRGQCTALISASWMGGFVHSIVQISLLLPLPFCGPNVLDTFYCD VPQVLKLTCTDTFALEFLMISNNGLVTTLWFIFLLVSYTVILMTLRSQAGGGRRKAISTC TSHITVVTLHFVPCIYVYARPFTALPTEKAISVTFTVISPLLNPLIYTLRNQEMKSAMRR LKRRLVPSERE Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 59,271,637 | 59,271,637 | NS | C/T | L/F | rs7120079 (DbSNP) |
| 11 | 59,271,882 | 59,271,882 | SYN | C/T | I/I | rs11823447 (DbSNP) |
| 11 | 59,504,164 | 59,504,164 | NS | T/C | F/L | 1000GP (CEU, CHBJPT) |
| 11 | 59,503,696 | 59,503,696 | NS | G/A | G/R | 1000GP (CEU) |
| 11 | 59,503,675 | 59,503,675 | NS | G/T | V/L | 1000GP (CHBJPT) |
| 11 | 100 | -100 | NS | C/G | A/G | 1000GP (YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 59,270,949 | 59,273,981 | CopyNumber | #80 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
| A143G | F197L | % Freq | CORP | |
|---|---|---|---|---|
| 1 | A | F | 66.44 | 0.877 |
| 2 | A | L | 31.72 | 0.877 |
| 3 | G | F | 1.84 | 0.877 |
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR4D11.aApr07-unspliced | main_exon | CDS | chr11 | 59,503,576 | 59,504,508 | + |
| 3UTR | chr11 | 59,504,508 | 59,504,511 | + | ||