OR4D9 Olfactory Receptor
| Gene Symbol | OR4D91 (View this gene in GeneCards) |
| Family | 4 |
| Subfamily | D |
| Pseudogene | No |
| CORP pseudogene probability score | 0.2 (functional) |
| Aliases | OR11-253, HsOR11.13.11, ORL3412 |
| External Ids | HGNC: 15178 GeneBank: AB065861, BK004309, NM_001004711 ORDB: ORL3412 |
| Build #39 labels | OR4D9 |
| Chromosomal location | 11:59,514,913-59,515,854 (+) |
| Cluster | 11@59a |
| Synteny | CLIC#27 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR4D10 | 79.35% | 310 |
| OR4D11 | 82.26% | 310 |
| OR4D8P | 77.81% | 302 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR4D9D | 85% | 310 |
| Dog | OR4D11 | 84% | 305 |
| Dog | OR4D9B | 82% | 310 |
| Mouse | Or4d10c | 83% | 307 |
| Mouse | Or4d11 | 81% | 310 |
| Mouse | Or4d10 | 82% | 305 |
| Rat | Or4d10c | 83% | 307 |
| Rat | Or4d10 | 82% | 308 |
| Rat | Or4d11 | 81% | 310 |
| Cow | OR4D9D | 82% | 310 |
| Cow | OR4D11 | 80% | 308 |
| Orang | OR4D9P | 95% | 307 |
| Horse | OR4D9K | 85% | 310 |
| Horse | OR4D11 | 84% | 308 |
| Chimp | OR4D11 | 82% | 310 |
Expression evidences
| Source | Accession |
|---|---|
| GNF Atlas2 | gnf1h02110_at |
Sequence information
| Nucleotide sequence |
ATGGATCAGAGAAATTACACCAGAGTGAAAGAATTTACCTTCCTGGGAATTACTCAGTCC CGAGAACTGAGCCAGGTCTTATTTACCTTCCTGTTTTTGGTGTACATGACAACTCTAATG GGAAACTTCCTCATCATGGTTACAGTTACCTGTGAATCTCACCTTCATACGCCCATGTAC TTCCTGCTCCGCAACCTGTCTATTCTTGACATCTGCTTTTCCTCCATCACAGCTCCTAAG GTCCTGATAGATCTTCTATCAGAGACAAAAACCATCTCCTTCAGTGGCTGTGTCACTCAA ATGTTCTTCTTCCACCTTCTGGGGGGAGCAGACGTTTTTTCTCTCTCTGTGATGGCGTTT GACCGCTATATAGCCATCTCCAAGCCCCTGCACTATATGACCATCATGAGTAGGGGGCGA TGCACAGGCCTCATCGTGGCTTCCTGGGTGGGGGGCTTTGTCCACTCCATAGCGCAGATT TCTCTATTGCTCCCACTCCCTTTCTGTGGACCCAATGTTCTTGACACTTTCTACTGCGAT GTCCCCCAGGTCCTCAAACTTGCCTGCACTGACACCTTCACTCTGGAGCTCCTGATGATT TCAAATAATGGGTTAGTCAGTTGGTTTGTATTCTTCTTTCTCCTCATATCTTACACGGTC ATCTTGATGATGCTGAGGTCTCACACTGGGGAAGGCAGGAGGAAAGCCATCTCCACCTGC ACCTCCCACATCACCGTGGTGACCCTGCATTTCGTGCCCTGCATCTATGTCTATGCCCGG CCCTTCACTGCCCTCCCCACAGACACTGCCATCTCTGTCACCTTCACTGTCATCTCCCCT TTGCTCAATCCTATAATTTACACGCTGAGGAATCAGGAAATGAAGTTGGCCATGAGGAAA CTGAAGAGACGGCTAGGACAATCAGAAAGGATTTTAATTCAA |
| Conceptual translation |
MDQRNYTRVKEFTFLGITQSRELSQVLFTFLFLVYMTTLMGNFLIMVTVTCESHLHTPMY FLLRNLSILDICFSSITAPKVLIDLLSETKTISFSGCVTQMFFFHLLGGADVFSLSVMAF DRYIAISKPLHYMTIMSRGRCTGLIVASWVGGFVHSIAQISLLLPLPFCGPNVLDTFYCD VPQVLKLACTDTFTLELLMISNNGLVSWFVFFFLLISYTVILMMLRSHTGEGRRKAISTC TSHITVVTLHFVPCIYVYARPFTALPTDTAISVTFTVISPLLNPIIYTLRNQEMKLAMRK LKRRLGQSERILIQ Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 59,282,861 | 59,282,861 | NS | A/G | Q/R | rs17501584 (DbSNP) |
| 11 | 59,283,310 | 59,283,310 | NS | C/G | Q/E | rs12794170 (DbSNP) |
| 11 | 59,283,309 | 59,283,309 | SYN | A/G | S/S | rs12796451 (DbSNP) |
| 11 | 59,515,388 | 59,515,388 | NS | A/G | Q/R | 1000GP (CEU) |
| 11 | 100 | -100 | SYN | G/A | K/K | 1000GP (YRI, YRI, YRI) |
| 11 | 100 | -100 | NS | C/T | T/I | 1000GP (YRI, YRI, YRI) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
| R64C | S75A | T89I | Q159R | T192S | T219M | C254S | R304W | L305P | % Freq | CORP | |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | R | S | T | Q | T | T | C | R | L | 93.09 | 0.285 |
| 2 | R | S | I | Q | S | T | C | R | P | 2.84 | 0.285 |
| 3 | R | S | T | R | T | T | C | R | L | 1.69 | 0.285 |
| 4 | R | A | T | Q | T | T | C | R | L | 0.84 | 0.285 |
| 5 | R | S | T | Q | T | M | C | R | L | 0.69 | 0.285 |
| 6 | R | S | T | Q | T | T | S | R | L | 0.38 | 0.285 |
| 7 | C | S | T | Q | T | T | C | R | L | 0.23 | 0.285 |
| 8 | R | S | T | Q | T | T | C | W | L | 0.15 | 0.285 |
| 9 | R | S | T | Q | S | M | C | R | P | 0.08 | 0.285 |
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR4D9.aApr07-unspliced | main_exon | CDS | chr11 | 59,514,913 | 59,515,854 | + |
| 3UTR | chr11 | 59,515,854 | 59,515,857 | + | ||