OR4F14P Olfactory Receptor
| Gene Symbol | OR4F14P1 (View this gene in GeneCards) |
| Family | 4 |
| Subfamily | F |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | HsOR15.2.3 |
| External Ids | HGNC: 15077 GeneBank: AB065901, AF276878, NG_004356 |
| Build #39 labels | OR4F14 |
| Chromosomal location | 15:101,828,741-101,829,676 (+) |
| Cluster | 15@102 |
| Synteny | CLIC#32 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR4F1P | 75.64% | 312 |
| OR4F28P | 75.64% | 312 |
| OR4F2P | 75.32% | 312 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR4F25 | 80% | 312 |
| Mouse | Or4f14 | 84% | 312 |
| Mouse | Or4f14d | 83% | 312 |
| Mouse | Or4f14b | 83% | 312 |
| Mouse | Or4f14c | 82% | 312 |
| Rat | Or4f14 | 84% | 312 |
| Rat | Or4f14f | 84% | 312 |
| Rat | Or4f14d | 82% | 312 |
| Cow | OR4F14G | 86% | 312 |
| Cow | OR4F14H | 85% | 312 |
| Cow | OR4F14 | 85% | 310 |
| Cow | OR4F14I | 83% | 312 |
| Orang | OR4F58BP | 74% | 309 |
| Horse | OR4F14O | 87% | 312 |
| Horse | OR4F14K | 86% | 312 |
| Horse | OR4F14 | 86% | 312 |
| Chimp | OR4F14 | 97% | 312 |
Expression evidences
| Source | Accession |
|---|---|
| GNF Atlas2 | gnf1h10667_at |
Sequence information
| Nucleotide sequence |
ATGGTTGGGGCAAATCACTCCGTGGTGTCAGAGTTTGTGTTCCTGGGACTCACCAATTCC TGGGAGATCCGACTTCTCCTCCTTGTGTTCTCCTCCATGTTTTACATGGCCAGTATGATG GGAAACTCTCTCATTTTGCTCACTGTGACTTCTGACCCTCACTTGCACTCCCCCATGTAT TTTCTGTTAGCCAACCTCTCCTTCATTGACCTGGGTGTTTCCTCTGTCACTTCTCCCAAA ATGATTTATGACCTGTTCAGAAAGCACGAAGTCATCTCCTTTGGAGGCTGCATCGCTCAA ATCTTCTTCATCCACGTCATTGGCGGTGTGGAGATGGTGCTGCTCATAGCCATGGCCTTT GACAGATATGTGGCCATATGTAAGCCCCTCCAGTACCTGACCATTATGAGCCCAAGAATG TGCATGTTCTTCTTAGTGGCTGCCTGGGTGACCGGCCTTATCCACTCTGTAGTTCAATTG GTTTTTGTAGTAAACTTGCCCTTCTGTGGTCCTAATGTATCGGACAGCTTTTACTGTGAC CTTCCTCGGTTCATCAAACTTGCCTGCACAGACAGCTACCGACTGGAGTTCATGGTTACA GCCAACAGTGGATTCATCTCTCTGGGCTCCTTCTTCATACTGATCATTTCCTATGTGGTC ATCATTCTCACTGTTCTGAAACACTCTTCAGCTGGTTTATCCAAGGCTCTGTCCACCCTT TCAGCTCACGTCAGTGTGGTAGTTTTGTTCTTTGGTCCTTTGATTTTTGTCTATACGTGG CCATCTCCCTCCACACACCTGGATAAGTTTCTGGCCATCTTTGATGCAGTTCTCACTCCT GTTTTAAATCCTATCATCTACACATTCAGGAATTGAGAAATGAAGGTGGCAATGAGAAAA GTATGCCGACAACTAGTAAATCACAGGAAGATCTCC |
| Conceptual translation |
MVGANHSVVSEFVFLGLTNSWEIRLLLLVFSSMFYMASMMGNSLILLTVTSDPHLHSPMY FLLANLSFIDLGVSSVTSPKMIYDLFRKHEVISFGGCIAQIFFIHVIGGVEMVLLIAMAF DRYVAICKPLQYLTIMSPRMCMFFLVAAWVTGLIHSVVQLVFVVNLPFCGPNVSDSFYCD LPRFIKLACTDSYRLEFMVTANSGFISLGSFFILIISYVVIILTVLKHSSAGLSKALSTL SAHVSVVVLFFGPLIFVYTWPSPSTHLDKFLAIFDAVLTPVLNPIIYTFRNXMKVAMRK VCRQLVNHRKIS Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 15 | 100 | -100 | SNP | C/T | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI) | |
| 15 | 101,828,980 | 101,828,980 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 15 | 101,829,176 | 101,829,176 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 15 | 101,829,474 | 101,829,474 | SNP | G/A | 1000GP (CHBJPT) | |
| 15 | 101,829,487 | 101,829,487 | SNP | G/T | 1000GP (CHBJPT) | |
| 15 | 101,829,508 | 101,829,508 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 15 | 102,369,013 | 102,369,013 | SNP | C/T | rs56657016 (DbSNP) | |
| 15 | 102,369,055 | 102,369,055 | SNP | A/G | rs61732921 (DbSNP) | |
| 15 | 102,369,128 | 102,369,128 | SNP | C/T | rs61910732 (DbSNP) | |
| 15 | 102,369,183 | 102,369,183 | SNP | A/G | rs8037368 (DbSNP) | |
| 15 | 102,369,363 | 102,369,363 | SNP | A/G | rs61740730 (DbSNP) | |
| 15 | 102,369,379 | 102,369,379 | SNP | A/G | rs11639153 (DbSNP) | |
| 15 | 102,369,410 | 102,369,410 | SNP | C/G | rs7181401 (DbSNP) | |
| 15 | 102,369,677 | 102,369,677 | SNP | A/G | rs61751945 (DbSNP) | |
| 15 | 102,369,711 | 102,369,711 | SNP | C/T | rs7165135 (DbSNP) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| CopyNumber | 24 (Hasin) | |||
| 15 | 101,991,277 | 102,393,237 | CopyNumber | Variation_34506 (DGV) |
| 15 | 102,036,377 | 102,393,237 | CopyNumber | Variation_8808 (DGV) |
| 15 | 102,271,630 | 102,431,074 | CopyNumber | Variation_3985 (DGV) |
| 15 | 102,277,237 | 102,431,074 | CopyNumber | Variation_2202 (DGV) |
| 15 | 102,305,129 | 102,393,477 | CopyNumber | Variation_8809 (DGV) |
| 15 | 102,359,357 | 102,401,216 | CopyNumber | Variation_66908 (DGV) |
| 15 | 102,359,361 | 102,399,861 | CopyNumber | Variation_30726 (DGV) |
| 15 | 102,368,844 | 102,371,879 | CopyNumber | #93 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.