OR4F1P Olfactory Receptor
| Gene Symbol | OR4F1P1 (View this gene in GeneCards) |
| Family | 4 |
| Subfamily | F |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | HSDJ0609N19, HsOR6.1.1P, ORL3151 |
| External Ids | HGNC: 8298 GeneBank: NG_004134, NG_004682 ORDB: ORL3151 |
| Build #39 labels | OR4F1P |
| Chromosomal location | 6:105,922-106,856 (-) |
| Cluster | 6@0 |
| Synteny | CLIC#0 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR4F2P | 99.04% | 312 |
| OR4F7P | 99.35% | 308 |
| OR4F8P | 98.4% | 312 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR4F1 | 91% | 312 |
| Mouse | Or4f7 | 82% | 312 |
| Rat | Or4f7 | 83% | 312 |
| Rat | Or4f7b | 83% | 312 |
| Rat | Or4f7c | 82% | 312 |
| Cow | OR4F1 | 90% | 312 |
| Cow | OR4F1D | 88% | 312 |
| Cow | OR4F1C | 88% | 309 |
| Orang | OR4F58BP | 72% | 309 |
| Horse | OR4F1 | 91% | 312 |
| Chimp | OR4F21 | 97% | 312 |
| Chimp | OR4F1 | 96% | 312 |
| Chimp | OR4F21BP | 95% | 310 |
Sequence information
| Nucleotide sequence |
ATGGATGGAGAGAATCACTCAGTGGTATCTGAGTTTTTGTTTCTGGGACTCACTCATTCA TGGGAGATCCAGCTCCTCCTCCTAGTGTTTTCCTCTGTGCTCTATGTGGCAAGCATTACT GGAAACATCCTCATTGTATTTTCTGTGACCACTGACCCTCACTTACACTCCCCCATGTAC TTTCTACTGGCCAGTCTCTCCTTCATTGACTTAGGAGCCTGCTCTGTCACTTCTCCCAAG ATGATTTATGACCTGTTCAGAAAGCGCAAAGTCATCTCCTTTGGAGGCTGCATCGCTCAA ATCTTCTTCATCCACGTCATTGGTGGTGTGGAGATGGTGCTGCTCATAGCCATGGCCTTT GACAGTTATGTGGCCCTATTAAGCCCCTCCACTATCTGACCATTATGAGCCCAAGAATGT GCCTTTCATTTCTGGCTGTTGCCTGGACCCTTGGTGTCAGTCACTCCCTGTTCCAACTGG CATTTCTTGTTAATTTACCCTTCTGTGGCCCTAATGTGTTGGACAGCTTCTACTGTGACC TTCCTCGGCTTCTCAGACTAGCCTGTACCGACACCTACAGATTGCAGTTCATGGTCACTG TTAACAGTGGGTTTATCTGTGTGGGTACTTTCTTCATACTTGTAATCTCCTACATCTTCA TCCTGTTTACTGTTTGGAAACATTCCTCAGGTGGTTCATCCAAGGCCCTTTCCACTCTTT CAGCTCACAGCACAGCGGTCCTTTTGTTCTTTGGTCCACCCATGTTTGTGTATACATGGC CACACCCTAATTCACAGATGGACAAGTTTCTGGCTATTTTTGATGCAGTTCTCACTCCTT TTCTGAATCCAGTTGTCTATACATTCAGGAATAAGGAGATGAAGGCAGCAATAAAGAGAG TATGCAAACAGCTAGTGATTTACAAGAAGATCTCA |
| Conceptual translation |
MDGENHSVVSEFLFLGLTHSWEIQLLLLVFSSVLYVASITGNILIVFSVTTDPHLHSPMY FLLASLSFIDLGACSVTSPKMIYDLFRKRKVISFGGCIAQIFFIHVIGGVEMVLLIAMAF DSYVAL/KPLHYLTIMSPRMCLSFLAVAWTLGVSHSLFQLAFLVNLPFCGPNVLDSFYC DLPRLLRLACTDTYRLQFMVTVNSGFICVGTFFILVISYIFILFTVWKHSSGGSSKALST LSAHSTAVLLFFGPPMFVYTWPHPNSQMDKFLAIFDAVLTPFLNPVVYTFRNKEMKAAIK RVCKQLVIYKKIS Protein domains and features |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 6 | 60,001 | 775,274 | CopyNumber | Variation_3593 (DGV) |
| 6 | 76,709 | 118,238 | CopyNumber | Variation_32767 (DGV) |
| 6 | 60,031 | 149,517 | CopyNumber | Variation_69282 (DGV) |
| 6 | 105,644 | 121,348 | CopyNumber | Variation_81178 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR4F1P.aApr07-unspliced | main_exon | CDS_partial | chr6 | 106,799 | 106,856 | - |
| 5UTR | chr6 | 106,856 | 107,645 | - | ||