OR4F21 Olfactory Receptor
| Gene Symbol | OR4F211 (View this gene in GeneCards) |
| Family | 4 |
| Subfamily | F |
| Pseudogene | No |
| CORP pseudogene probability score | 0.58 (pseudogene) |
| Aliases | HsOR8.1.1 |
| External Ids | HGNC: 19583 GeneBank: NM_001005504 |
| Build #39 labels | OR4F21P |
| Chromosomal location | 8:166,089-167,024 (-) |
| Cluster | 8@0 |
| Synteny | CLIC#0 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR4F16 | 99.04% | 312 |
| OR4F29 | 99.04% | 312 |
| OR4F3 | 99.04% | 312 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR4F1 | 91% | 312 |
| Mouse | Or4f7 | 81% | 312 |
| Rat | Or4f7b | 82% | 312 |
| Rat | Or4f7 | 82% | 312 |
| Rat | Or4f7c | 82% | 312 |
| Cow | OR4F1 | 90% | 312 |
| Cow | OR4F1D | 88% | 312 |
| Cow | OR4F1C | 88% | 309 |
| Orang | OR4F58BP | 72% | 309 |
| Horse | OR4F1 | 90% | 312 |
| Horse | OR4F1F | 87% | 286 |
| Chimp | OR4F1 | 97% | 312 |
| Chimp | OR4F21BP | 96% | 310 |
Expression evidences
| Source | Accession |
|---|---|
| GNF Atlas2 | 221539_at |
Sequence information
| Nucleotide sequence |
ATGGATGGAGAGAATCACTCAGTGGTATCTGAGTTTTTGTTTCTGGGACTCACTCATTCA TGGGAGATCCAGCTCCTCCTCCTAGTGTTTTCCTCTGTGCTCTATGTGGCAAGCATTACT GGAAACATCTTCATTGTGTTTTCTGTGACCACTGACCCTCACTTACACTCCCCCATGTAC TTTCTACTGGCCAGTCTCTCCTTCATTGACTTAGGAGCCTGCTCTGTCACTTCTCCCAAG ATGATTTATGACCTGTTCAGAAAGCGCAAAGTCATCTCCTTTGGAGGCTGCATCGCTCAA ATCTTCTTCATCCACGTCATTGGTGGTGTGGAGATGGTGCTGCTCATAGCCATGGCCTTT GACAGATATGTGGCCCTATGTAAGCCCCTCCACTATCTGACCATTATGAGCCCAAGAATG TGCCTTTCATTTCTGGCTGTTGCCTGGACCCTTGGTGTCAGTCACTCCCTGTTCCAACTG GCATTTCTTGTTAATTTAGCCTTCTGTGGCCCTAATGTGTTGGACAGCTTCTACTGTGAC CTTCCTCGGCTTCTCAGACTAGCCTGTACCGACACCTACAGATTGCAGTTCATGGTCACT GTTAACAGTGGGTTTATCTGTGTGGGTACTTTCTTCATACTTCTAATCTCCTACGTCTTC ATCCTGTTTACTGTTTGGAAACATTCCTCAGGTGGTTCATCCAAGGCCCTTTCCACTCTT TCAGCTCACAGCACAGTGGTCCTTTTGTTCTTTGGTCCACCCATGTTTGTGTATACACGG CCACACCCTAATTCACAGATGGACAAGTTTCTGGCTATTTTTGATGCAGTTCTCACTCCT TTTCTGAATCCAGTTGTCTATACATTCAGGAATAAGGAGATGAAGGCAGCAATAAAGAGA GTATGCAAACAGCTAGTGATTTACAAGAAGATCTCA |
| Conceptual translation |
MDGENHSVVSEFLFLGLTHSWEIQLLLLVFSSVLYVASITGNIFIVFSVTTDPHLHSPMY FLLASLSFIDLGACSVTSPKMIYDLFRKRKVISFGGCIAQIFFIHVIGGVEMVLLIAMAF DRYVALCKPLHYLTIMSPRMCLSFLAVAWTLGVSHSLFQLAFLVNLAFCGPNVLDSFYCD LPRLLRLACTDTYRLQFMVTVNSGFICVGTFFILLISYVFILFTVWKHSSGGSSKALSTL SAHSTVVLLFFGPPMFVYTRPHPNSQMDKFLAIFDAVLTPFLNPVVYTFRNKEMKAAIKR VCKQLVIYKKIS Protein domains and features |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 8 | 17,005 | 131,941 | CopyNumber | Variation_70154 (DGV) |
| 8 | 22,850 | 128,483 | CopyNumber | Variation_32973 (DGV) |
| 8 | 35,462 | 153,512 | CopyNumber | Variation_95092 (DGV) |
| 8 | 40,472 | 198,712 | CopyNumber | Variation_4575 (DGV) |
| 8 | 69,932 | 520,115 | CopyNumber | Variation_3716 (DGV) |
| 8 | 76,830 | 155,180 | CopyNumber | Variation_70151 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR4F21.aApr07-unspliced | main_exon | 3UTR | chr8 | 166,086 | 166,089 | - |
| CDS | chr8 | 166,089 | 167,024 | - | ||
| 5UTR | chr8 | 167,024 | 167,823 | - | ||