OR4R1P Olfactory Receptor
| Gene Symbol | OR4R1P1 (View this gene in GeneCards) |
| Family | 4 |
| Subfamily | R |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | ORL3500 |
| External Ids | HGNC: 14798 GeneBank: NG_002265 ORDB: ORL3500 |
| Build #39 labels | OR4R1P |
| Chromosomal location | 11:48,486,186-48,487,031 (-) |
| Cluster | 11@48 |
| Synteny | CLIC#26 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR4R2P | 80.51% | 272 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR4C58 | 64% | 205 |
| Mouse | Or4c58 | 63% | 206 |
| Rat | Or4c58 | 63% | 203 |
| Cow | OR4C21P | 61% | 207 |
| Orang | OR4C9P | 55% | 207 |
| Horse | OR4C2 | 60% | 209 |
| Chimp | OR4R2P | 89% | 195 |
Sequence information
| Nucleotide sequence |
ACCAGTAAATAAATTTTTCTAACACTTGCTGTAAGATATCAAATGCTAATCAGTACTCTG TGTCATATTTTGTAAATGAAATCATCATATAAGTTTATTGAGTTTTTTTGAGTACCTAAT GAGTTAATAAAAAAATATGGGAGCATATGTAGTACCATGCTTGTATCAATATGGATAAAG TATCTGGAAGTCTTTGCTGAGCATCTTTTGGTGCTGCTGAGATTATTCCACTGATGGGGA TGGTCCATGGCTGTTATGTGACCATCTGCACTACATGACCATCATGAATCAATATAGGTG TAGCCATCTCACTGGAATGGCATGTACTGGAAGCTTTATCCAGGCACAGTTTAGATCCTC TCCCCAGTCTGACTTCCTTTCTATGATCCCAATGTCATAGCTCATTCATGTGTGACTTAA ACACTTTGTTGAAACTCCTCTGCATGGGTACTACTAATACACTTGGTTTCTTTGTTGCTG CCAATGGTGGGTTCAACTACCTATTAAACATCATTTTCTTGATGGTTTCTTAAGTGGCCA TCCTATGTACTTTGAAAACTCACAGCTTGGAGGAAAGATGCTAAAGCCCTCTCTACCTGC ATCTCTCACACCACCGTGGTCATCTTATCTTTGGGTTCTGTATATCTGTGTATCTGTGCC CAGTGACCCTTCCCCAATCAATAAAGCAGTGGCTGTGTTTTATACCATGATAAATCCTAT GTTAAAACCTTTAGTCTAACCCTCAGAAATGCAGAGGTGAAAAGTGCTTTGAGAAAGCTC TGGGTCAAAAGATGAACTGAAGAGAGAAATAATCCAAACATAAGATGATTTTACCCTTTC AGTGGT |
| Conceptual translation |
TSKXFLTLAVRYQMLISTLCHILXKSSYKFIEFFXPNELIKKYGSICSTMLVSIWIK YLEVFAEH/FGAAEIIPLMGMVHGCYVTI/HYMTIMNQYRCSHLTGMAWTGSFI/GT VXLSPVXPFYDPNVIA/FMCDLNTLLKLLCMGTTNTLGFFVAANGGFNYLLNIIFLM VSXAILCTLKTHSLEER\KALSTCISHTTVVIL/FGFCISVYLCPV/PSPINKAVA VFYTMINPMLKPLV/TLRNAEVKSALRKLWVKRXEERNNPNIRXYPFSG Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 100 | -100 | SNP | C/A | 1000GP (YRI) | |
| 11 | 48,508,287 | 48,508,287 | SNP | C/T | rs56236821 (DbSNP) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 48,303,671 | 48,863,606 | CopyNumber | Variation_3848 (DGV) |
| 11 | 48,346,202 | 48,972,502 | CopyNumber | Variation_9183 (DGV) |
| 11 | 48,365,757 | 49,068,634 | CopyNumber | Variation_2922 (DGV) |
| 11 | 48,479,497 | 48,689,328 | CopyNumber | Variation_5013 (DGV) |
| 11 | 48,505,738 | 48,508,683 | Deletion | #205 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.