OR4R3P Olfactory Receptor
Gene Symbol | OR4R3P1 (View this gene in GeneCards) |
Family | 4 |
Subfamily | R |
Pseudogene | Yes |
CORP pseudogene probability score | |
Aliases | ORL3635 |
External Ids | HGNC: 15182 GeneBank: NG_004230 ORDB: ORL3635 |
Build #39 labels | OR4R3P |
Chromosomal location | 11:49,923,050-49,923,887 (+) |
Cluster | 11@50 |
Synteny | CLIC#26 |
Remarks |
Most Similar ORs in Humans (Paralogs)
Symbol | Percent | Length |
---|---|---|
OR4R1P | 71.85% | 270 |
OR4R2P | 68.48% | 257 |
Most Similar ORs in other species (Orthologs)
Specie | Symbol | Percent | Length |
---|---|---|---|
Dog | OR4C58 | 59% | 206 |
Mouse | Or4c58 | 60% | 209 |
Rat | Or4c58 | 59% | 206 |
Cow | OR4C21P | 56% | 209 |
Orang | OR4C9P | 53% | 210 |
Horse | OR4C2 | 54% | 212 |
Chimp | OR4R1P | 77% | 206 |
Sequence information
Nucleotide sequence |
ATGATAACCATCTTATGGGAAATATCTAAACCAGTAAATAATATTTTTCTAACACTTTCT GTAAGATATCAAATGCTAATCACTACTGTGTCATAATTGTAAATGAAATTATAATATAAA TTTACTGAGTTTTTCTGAGTACCTAATGAGTTAAAAAATATGGGAGCATATGTAGTACTG TGCTTGTATCAATATGGATAAGGTATCTGGAAGTCTTTTCTGAACATCTTTCGGTGCTGC TGAGATTATTCCACTGATGGGGATGGTCCATGGCTGCTATGTGACCATCTGCACTGCATG AAAATCATGACTCAATATAGGTGTGGCCATCTTGCTGGAATGGCATGCACTGGAAGATTT ATCCAGGCACAGTTTAGATCCTCTCCCCAGTCTGACTTCCTTTCTATAATTCCAATGTCA CAATATGAATAGCCCATTCATATGTGACTTAAACACTTTGTTGAAGCTCCTCTGCATAGG TAGTATGATACACTTGGTCTCTTTGTTGCTGCCAATGATGGGTTCAACTGCCTGTTAAAC ATCATCTTCTTGATGGTTTCTTAAGTGGCCATCCTATATACTTTGAAATCCCACAGCTTG GAGGAAAGATACAAAGCTCTCTCTACCTGTGTCTCTCACACCACCGTGGCCATCTAATTC TTTGTGTTCTGTATACTTGTGTATCTGTGCCCAGTGACCCTTCCCCAGTCAGTAAAGCAG TGGCTGTGCTTTACACCATGATAACGCCTACATTAAACCCTTTAGTCTAACCCTCAGAAA TGCAGAGGTGAAAAGTGTTGAGAAACTTCTGGGTCAAAAGATGACTTGAAGAGAGAAA |
Conceptual translation |
MITILWEISKPVNNIFLTLSVRYQMLITTV\NCKXYNINLLSFSEYLMSXI\SICS TVLVSIWIRYLEVFSEH/FGAAEIIPLMGMVHGCYVTICTA/KIMTQYRCGHLAGMAC TGRFI/GTVXLSPVXPFYNSNVTIXA/FICDLNTLLKLLCIGS/DTLGLFVAAN DGFNCLLNIIFLMVSXAILYTLKSHSLEERYKALSTCVSHTTVAIXFVFCILVYLCPV /PSPVSKAVAVLYTMITPTLNPLV/TLRNAEVKSVEKLLGQKMTXEK Protein domains and features |
Variations - SNPs
Chr | Start | End | Type | Variation | AA Change | SNP IDs |
---|---|---|---|---|---|---|
11 | 49,944,874 | 49,944,874 | SNP | A/G | rs7946556 (DbSNP) | |
11 | 49,944,631 | 49,944,631 | SNP | G/A | rs2903410 (DbSNP) | |
11 | 49,944,780 | 49,944,780 | SNP | G/T | rs73468971 (DbSNP) | |
11 | 49,945,282 | 49,945,282 | SNP | T/G | rs1829949 (DbSNP) | |
11 | 49,923,322 | 49,923,322 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
11 | 49,923,730 | 49,923,730 | SNP | G/T | 1000GP (CEU, CHBJPT) | |
11 | 49,923,776 | 49,923,776 | SNP | T/G | 1000GP (CHBJPT) | |
11 | 49,923,873 | 49,923,873 | SNP | A/G | 1000GP (CHBJPT) | |
11 | 100 | -100 | SNP | G/A | 1000GP (YRI, YRI, YRI, YRI) |
Variations - CNVs
Chr | Start | End | Type | Sources |
---|---|---|---|---|
11 | 49,732,291 | 50,117,547 | CopyNumber | Variation_6919 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.