OR51D1 Olfactory Receptor
| Gene Symbol | OR51D11 (View this gene in GeneCards) |
| Family | 51 |
| Subfamily | D |
| Pseudogene | No |
| CORP pseudogene probability score | 0.04 (functional) |
| Aliases | OR11-14, HsOR11.3.13, ORL3398 |
| External Ids | HGNC: 15193 GeneBank: AB065855, BK004370, NM_001004751 ORDB: ORL3398 |
| Build #39 labels | OR51D1 |
| Chromosomal location | 11:4,639,791-4,640,762 (+) |
| Cluster | 11@5 |
| Synteny | CLIC#23 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR51E2 | 58.63% | 307 |
| OR51G2 | 54.67% | 300 |
| OR51I2 | 52.3% | 304 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR51E2 | 58% | 310 |
| Mouse | Or51d1 | 89% | 321 |
| Rat | Or51d1 | 88% | 321 |
| Cow | OR51E1 | 58% | 306 |
| Orang | OR51D1P | 93% | 273 |
| Horse | OR51E2 | 57% | 310 |
| Chimp | OR51E2 | 58% | 308 |
Expression evidences
| Source | Accession |
|---|---|
| mRNA | BC140717 |
| GNF Atlas2 | gnf1h10685_at |
Sequence information
| Nucleotide sequence |
ATGCAGAAGCCCCAGCTCTTGGTCCCTATCATAGCCACTTCAAATGGAAATCTGGTCCAC GCAGCATACTTCCTTTTGGTGGGTATCCCTGGCCTGGGGCCTACCATACACTTTTGGCTG GCTTTCCCACTGTGTTTTATGTATGCCTTGGCCACCCTGGGTAACCTGACCATTGTCCTC ATCATTCGTGTGGAGAGGCGACTGCATGAGCCCATGTACCTCTTCCTGGCCATGCTTTCC ACTATTGACCTAGTCCTCTCCTCTATCACCATGCCCAAGATGGCCAGTCTTTTCCTGATG GGCATCCAGGAGATCGAGTTCAACATTTGCCTGGCCCAGATGTTCCTTATCCATGCTCTG TCAGCCGTGGAGTCAGCTGTCCTGCTGGCCATGGCTTTTGACCGCTTTGTGGCCATTTGC CACCCATTGCGCCATGCTTCTGTGCTGACAGGGTGTACTGTGGCCAAGATTGGACTATCT GCCCTGACCAGGGGGTTTGTATTCTTCTTCCCACTGCCCTTCATCCTCAAGTGGTTGTCC TACTGCCAAACACATACTGTCACACACTCCTTCTGTCTGCACCAAGATATTATGAAGCTG TCCTGTACTGACACCAGGGTCAATGTGGTTTATGGACTCTTCATCATCCTCTCAGTCATG GGTGTGGACTCTCTCTTCATTGGCTTCTCATATATCCTCATCCTGTGGGCTGTTTTGGAG CTGTCCTCTCGGAGGGCAGCACTCAAGGCTTTCAACACCTGCATCTCCCACCTCTGTGCT GTTCTGGTCTTCTATGTACCCCTCATTGGGCTCTCGGTGGTGCATAGGCTGGGTGGTCCC ACCTCCCTCCTCCATGTGGTTATGGCTAATACCTACTTGCTGCTACCACCTGTAGTCAAC CCCCTTGTCTATGGAGCCAAGACCAAAGAGATCTGTTCAAGGGTCCTCTGTATGTTCTCA CAAGGTGGCAAG |
| Conceptual translation |
MQKPQLLVPIIATSNGNLVHAAYFLLVGIPGLGPTIHFWLAFPLCFMYALATLGNLTIVL IIRVERRLHEPMYLFLAMLSTIDLVLSSITMPKMASLFLMGIQEIEFNICLAQMFLIHAL SAVESAVLLAMAFDRFVAICHPLRHASVLTGCTVAKIGLSALTRGFVFFFPLPFILKWLS YCQTHTVTHSFCLHQDIMKLSCTDTRVNVVYGLFIILSVMGVDSLFIGFSYILILWAVLE LSSRRAALKAFNTCISHLCAVLVFYVPLIGLSVVHRLGGPTSLLHVVMANTYLLLPPVVN PLVYGAKTKEICSRVLCMFSQGGK Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 4,661,568 | 4,661,568 | NS | A/G | Q/R | rs61746547 (DbSNP) |
| 11 | 4,661,424 | 4,661,424 | NS | A/G | H/R | rs61745314 (DbSNP) |
| 11 | 4,661,925 | 4,661,925 | NS | C/T | P/L | rs11033139 (DbSNP) |
| 11 | 4,661,243 | 4,661,243 | NS | C/T | L/F | rs61740347 (DbSNP) |
| 11 | 4,661,285 | 4,661,285 | NS | G/A | V/I | rs905871 (DbSNP) |
| 11 | 4,640,013 | 4,640,013 | NS | T/C | F/L | 1000GP (CEU, CHBJPT) |
| 11 | 4,640,338 | 4,640,338 | NS | A/G | Q/R | 1000GP (CEU) |
| 11 | 4,640,596 | 4,640,596 | NS | T/C | I/T | 1000GP (CEU) |
| 11 | 4,640,633 | 4,640,633 | SYN | C/T | T/T | 1000GP (CEU) |
| 11 | 4,640,055 | 4,640,055 | NS | A/G | I/V | 1000GP (CEU) |
| 11 | 100 | -100 | NS | T/C | F/L | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 4,660,921 | 4,663,992 | CopyNumber | #154 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
| T57S | F75L | I89V | K93T | Q103R | R135H | G165V | Q183R | I269T | % Freq | CORP | |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | T | F | I | K | Q | R | G | Q | I | 79.26 | 0.024 |
| 2 | T | F | V | K | Q | R | G | Q | I | 13.90 | 0.024 |
| 3 | T | L | I | K | Q | R | G | R | T | 4.15 | 0.024 |
| 4 | T | F | I | K | Q | H | G | Q | I | 0.54 | 0.306 |
| 5 | S | F | I | K | Q | R | G | Q | I | 0.38 | 0.024 |
| 6 | T | F | I | T | Q | R | G | Q | I | 0.38 | 0.024 |
| 7 | T | F | I | K | Q | R | V | Q | I | 0.31 | 0.024 |
| 8 | T | L | I | K | Q | R | G | Q | T | 0.31 | 0.024 |
| 9 | T | L | V | K | Q | R | G | Q | I | 0.23 | 0.024 |
| 10 | T | F | I | K | R | R | G | Q | I | 0.15 | 0.024 |
| 11 | T | F | V | K | Q | R | G | Q | T | 0.08 | 0.024 |
| 12 | T | L | I | K | Q | R | G | R | I | 0.08 | 0.024 |
| 13 | T | F | V | K | Q | R | G | R | I | 0.08 | 0.024 |
| 14 | T | F | I | K | Q | R | G | Q | T | 0.08 | 0.024 |
| 15 | T | F | I | K | Q | R | G | R | I | 0.08 | 0.024 |
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR51D1.aApr07-unspliced | main_exon | CDS | chr11 | 4,639,791 | 4,640,762 | + |
| 3UTR | chr11 | 4,640,762 | 4,640,765 | + | ||