OR51T1 Olfactory Receptor
| Gene Symbol | OR51T11 (View this gene in GeneCards) |
| Family | 51 |
| Subfamily | T |
| Pseudogene | No |
| CORP pseudogene probability score | 0.01 (functional) |
| Aliases | OR11-26, HsOR11.3.30, ORL3418 |
| External Ids | HGNC: 15205 GeneBank: AB065795, BK004283, NM_001004759 ORDB: ORL3418 |
| Build #39 labels | OR51T1 |
| Chromosomal location | 11:4,881,900-4,882,880 (+) |
| Cluster | 11@5 |
| Synteny | CLIC#23 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR51F1 | 53.21% | 312 |
| OR51F2 | 51.27% | 314 |
| OR51F5P | 51.92% | 312 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR51F1 | 54% | 314 |
| Mouse | Or51t4 | 78% | 327 |
| Rat | Or51f2b | 54% | 314 |
| Cow | OR51T5 | 77% | 327 |
| Orang | OR51F22 | 51% | 314 |
| Horse | OR51T6 | 79% | 325 |
| Chimp | OR51F2 | 51% | 314 |
Expression evidences
| Source | Accession |
|---|---|
| mRNA | BC172458 |
| GNF Atlas2 | gnf1h10686_at |
Sequence information
| Nucleotide sequence |
ATGGCAATATTCAATAACACCACTTCGTCTTCCTCAAACTTCCTCCTCACTGCATTCCCT GGGCTGGAATGTGCTCATGTCTGGATCTCCATTCCAGTCTGCTGTCTCTACACCATTGCC CTCTTGGGAAACAGTATGATCTTTCTTGTCATCATTACTAAGCGGAGACTCCACAAACCC ATGTATTATTTCCTCTCCATGCTGGCAGCTGTTGATCTATGTCTGACCATTACGACCCTT CCCACTGTGCTTGGTGTTCTCTGGTTTCATGCCCGGGAGATCAGCTTTAAAGCTTGCTTC ATTCAAATGTTCTTTGTGCATGCTTTCTCCTTGCTGGAGTCCTCGGTGCTGGTAGCCATG GCCTTTGACCGCTTCGTGGCTATCTGTAACCCACTGAACTATGCTACTATCCTCACAGAC AGGATGGTCCTGGTGATAGGGCTGGTCATCTGCATTAGACCAGCAGTTTTCTTACTTCCC CTTCTTGTAGCCATAAACACTGTGTCTTTTCATGGGGGTCACGAGCTTTCCCATCCATTT TGCTACCACCCAGAAGTGATCAAATACACATATTCCAAACCTTGGATCAGCAGTTTTTGG GGACTGTTTCTTCAGCTCTACCTGAATGGCACTGACGTATTGTTTATTCTTTTCTCCTAT GTCCTGATCCTCCGTACTGTTCTGGGCATTGTGGCCCGAAAGAAGCAACAAAAAGCTCTC AGCACTTGTGTCTGTCACATCTGTGCAGTCACTATTTTCTATGTGCCACTGATCAGCCTC TCTTTGGCACACCGCCTCTTCCACTCCACCCCAAGGGTGCTCTGTAGCACTTTGGCCAAT ATTTATCTGCTCTTACCACCTGTGCTGAACCCTATCATTTACAGCTTGAAGACCAAGACA ATCCGCCAGGCTATGTTCCAGCTGCTCCAATCCAAGGGTTCATGGGGTTTTAATGTGAGG GGTCTTAGGGGAAGATGGGAT |
| Conceptual translation |
MAIFNNTTSSSSNFLLTAFPGLECAHVWISIPVCCLYTIALLGNSMIFLVIITKRRLHKP MYYFLSMLAAVDLCLTITTLPTVLGVLWFHAREISFKACFIQMFFVHAFSLLESSVLVAM AFDRFVAICNPLNYATILTDRMVLVIGLVICIRPAVFLLPLLVAINTVSFHGGHELSHPF CYHPEVIKYTYSKPWISSFWGLFLQLYLNGTDVLFILFSYVLILRTVLGIVARKKQQKAL STCVCHICAVTIFYVPLISLSLAHRLFHSTPRVLCSTLANIYLLLPPVLNPIIYSLKTKT IRQAMFQLLQSKGSWGFNVRGLRGRWD Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 100 | -100 | SYN | C/G | V/V | 1000GP (YRI, YRI, YRI) |
| 11 | 4,882,852 | 4,882,852 | NS | A/G | N/S | 1000GP (CEU) |
| 11 | 4,903,149 | 4,903,148 | Ins(1) | -/G | rs34690738 (DbSNP) | |
| 11 | 4,903,210 | 4,903,210 | SYN | C/G | V/V | rs73405010 (DbSNP) |
| 11 | 4,903,231 | 4,903,231 | SYN | C/T | C/C | rs61735140 (DbSNP) |
| 11 | 4,903,319 | 4,903,318 | Ins(1) | -/G | rs34407966 (DbSNP) | |
| 11 | 4,903,390 | 4,903,390 | SYN | C/G | L/L | rs61995697 (DbSNP) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| CopyNumber | 90 (Hasin) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
| R124H | V213I | % Freq | CORP | |
|---|---|---|---|---|
| 1 | R | V | 98.39 | 0.007 |
| 2 | H | V | 1.15 | 0.111 |
| 3 | R | I | 0.46 | 0.007 |
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR51T1.aApr07-unspliced | main_exon | 5UTR | chr11 | 4,881,819 | 4,881,900 | + |
| CDS | chr11 | 4,881,900 | 4,882,880 | + | ||
| 3UTR | chr11 | 4,882,880 | 4,882,883 | + | ||