OR52B3P Olfactory Receptor
| Gene Symbol | OR52B3P1 (View this gene in GeneCards) |
| Family | 52 |
| Subfamily | B |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR11-4, PJCG7, HsOR11.3.3P, ORL3563 |
| External Ids | HGNC: 15208 GeneBank: AB065523, AF359417, BK004565, NG_004311 ORDB: ORL3563 |
| Build #39 labels | OR52B3P |
| Chromosomal location | 11:4,378,282-4,379,224 (+) |
| Cluster | 11@5 |
| Synteny | CLIC#23 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR52B4 | 63.38% | 314 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR52B3 | 82% | 311 |
| Mouse | Or52b3 | 83% | 314 |
| Rat | Or52b3-ps | 78% | 314 |
| Cow | OR52B3 | 83% | 314 |
| Orang | OR52B3 | 92% | 314 |
| Horse | OR52B4D | 65% | 314 |
| Chimp | OR52B3 | 97% | 314 |
Expression evidences
| Source | Accession |
|---|---|
| mRNA | AF359417 |
| GNF Atlas2 | gnf1h10983_at |
Sequence information
| Nucleotide sequence |
ATGACAACCCACAACTCCACTGGTAGCAGCCACTCACTCTTCATTCTGCTGAGCATTCCT GGCTTAGAAGACCAGCACACATGGATGTCTCTCCCCTTCTTTATTTCCTACCTTGTTGCT TTCCTTGGGAACAGCCTCATCATCTTCATCATCATCACTGAATGCAGCCTCCACGAACCC ATGTACCTTTTCCTCTGCATGCTGGCTGTGGCTGACCTTATCCTGTCTACTACCACTGTG CCCAAGGCCCTAGCCATATTTTGGTTCTATGCTGGAGCAATATCCCTTGGTGGCTGTGTT ACCCAAATCTTCTTTATCCATGCTACCTTCATCGAGGAATCAGGAATTCTGTTGGCGATG GCACTTGACCGCTATGTGGCCATCTGTGATCCACTGCACTATACCACAGTGCTCAGTCGT GCAAAAATCACAAAGATTGGCTTGGCTGTGGTCCTGAGAAGCTTCTGTGTGATCATGCCA GATGTGTTTCTGGTAAAGCGGCTGCCTTTCTGCCATAGCAATCTGCTGCCACATACCTAC TGTGAGCACATGGCTGTTGCCAAGTTTGCTTGTGCTGATATTCATGTCAATGTTTGGTAT GGCTTGTCTGTCCTTCTCTATACTGTAGTGCTAGATGCCTTGCTTATCTTAGTGTCCTAT AGCTTCATCCTGTATACAGGCTTCCACCTCCCCTCCCCAAGGAGCTCGGCAAAAGGCTCT GGGCACATGTGGCTCCCACCTCAGAGTCATTTCCATGTTCTACTTGCCTGGTATTTTTAC CATAATTACCCAGCGGTTTGGGCACCATGTTCCTCTCCATACACACATTCTGCTGGCTAA TGTCTGCGTGTTGGCTCCTCCCATGCTGAACCCCATCATTTATGGGATCAACACCAGGCA GATTCAAGAGTGTGTGCTCAGTCTTTTGTCCTCACAGAGGAAA |
| Conceptual translation |
MTTHNSTGSSHSLFILLSIPGLEDQHTWMSLPFFISYLVAFLGNSLIIFIIITECSLHEP MYLFLCMLAVADLILSTTTVPKALAIFWFYAGAISLGGCVTQIFFIHATFIEESGILLAM ALDRYVAICDPLHYTTVLSRAKITKIGLAVVLRSFCVIMPDVFLVKRLPFCHSNLLPHTY CEHMAVAKFACADIHVNVWYGLSVLLYTVVLDALLILVSYSFILYTGFHLPSPRS\QKA LGTCGSHLRVISMFYLPGIFTIITQRFGHHVPLHTHILLANVCVLAPPMLNPIIYGINTR QIQECVLSLLSSQRK Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 4,400,131 | 4,400,131 | SNP | A/C | rs11821519 (DbSNP) | |
| 11 | 4,399,936 | 4,399,936 | SNP | A/C | rs7124081 (DbSNP) | |
| 11 | 4,399,727 | 4,399,727 | SNP | C/G | rs11032023 (DbSNP) | |
| 11 | 4,400,341 | 4,400,341 | SNP | T/C | rs426034 (DbSNP) | |
| 11 | 4,400,355 | 4,400,355 | SNP | T/C | rs431345 (DbSNP) | |
| 11 | 4,400,271 | 4,400,271 | SNP | T/C | rs433940 (DbSNP) | |
| 11 | 4,378,303 | 4,378,303 | SNP | G/A | 1000GP (CEU) | |
| 11 | 4,378,333 | 4,378,333 | SNP | A/G | 1000GP (CEU) | |
| 11 | 4,378,514 | 4,378,514 | SNP | C/T | 1000GP (CEU) | |
| 11 | 4,378,706 | 4,378,706 | SNP | A/C | 1000GP (CEU, CHBJPT) | |
| 11 | 4,378,604 | 4,378,604 | SNP | C/T | 1000GP (CHBJPT) | |
| 11 | 4,378,887 | 4,378,887 | SNP | G/T | 1000GP (CHBJPT) | |
| 11 | 4,379,038 | 4,379,038 | SNP | G/A | 1000GP (CHBJPT) | |
| 11 | 100 | -100 | SNP | T/C | 1000GP (YRI, YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 4,333,543 | 4,474,341 | CopyNumber | Variation_2164 (DGV) |
| 11 | 4,055,945 | 4,510,188 | CopyNumber | Variation_3834 (DGV) |
| 11 | 4,400,251 | 4,400,481 | Del(-23) | #15(modil) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR52B3P.aApr07-unspliced | main_exon | CDS_partial | chr11 | 4,378,639 | 4,379,163 | + |